G152906


Basic Information

Item Value
gene id G152906
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4292030 ~ 4292882 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192568
GGCCAGGCCGGTCAGCCTCTCACTGACCTCCCACAGCTTCTTGGCCACGGCGTCATCCCGGGCCTTGGCTCCCACCTCCTGCACGGCGCAGTTGGAGAAGTAGCGCCCGCTGAGCGGCTCAATGCTCTCCTGCAGCGCACAGTGCAGGGTGGTCTGGGCGCCGGCCTCTGCGTCCACTGCAAACAGTCTGCCAATGGGTTCGAAGGCCGCTTTGATCCAAGGATTGAAATTCCGGCCCATTTCTGTTTTCACTATTNNNNNNNNNNNACTGTAGCAGGTGACGTTGGTGCCCTGCAGCCTCTTGGCCAGCTCATGGGTGAAGAGCACATTGCAGAGCTTGCTGTGGCCGTAGGTCTTCATAATCCTGTAGAAGGAGTCTCCCAGCCCCAGGTCTTTGTGGGTGTTGATGCAGTCAAAGTCAATCTGCCCGGAAN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192568 True 434 lncRNA 0.57 2 4292030 4292882

Neighbor

gene id symbol gene type direction distance location
AMCG00005534 phf12 coding upstream 11585 4264415 ~ 4280445 (+)
AMCG00005536 NA coding upstream 41182 4240208 ~ 4250848 (+)
AMCG00005535 LOC107690431,LOC107592631,LOC107743685 coding upstream 64340 4219881 ~ 4227690 (+)
AMCG00005567 LOC107718289,LOC105897181 coding upstream 298751 3918356 ~ 3993279 (+)
AMCG00005556 LOC107690467,LOC107718289,LOC107664918,LOC107743726,LOC108425789,LOC107585604 coding upstream 402369 3886333 ~ 3889661 (+)
AMCG00005537 NA coding downstream 12743 4305625 ~ 4310148 (+)
AMCG00005544 lhx1a,LOC105897175,LOC105023804,LOC106613102,LOC106581220,LOC107685180 coding downstream 186564 4479446 ~ 4490819 (+)
AMCG00005545 LOC103910010 coding downstream 202726 4495608 ~ 4520105 (+)
AMCG00005553 NA coding downstream 311994 4604876 ~ 4615951 (+)
AMCG00005554 NA coding downstream 333231 4626113 ~ 4635255 (+)
G152866 NA non-coding upstream 31395 4258866 ~ 4260635 (+)
G152764 NA non-coding upstream 530203 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 1031601 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 1091843 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 1105042 3183821 ~ 3186988 (+)
G152943 NA non-coding downstream 239439 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 897645 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 902906 5195788 ~ 5201535 (+)
G153113 NA non-coding downstream 1015063 5307945 ~ 5309091 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding downstream 1028178 5321060 ~ 5323923 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 1021186 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 1442422 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 1781354 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 2345230 1929455 ~ 1946800 (+)
G152337 NA other upstream 2488127 1799811 ~ 1803903 (+)
AMCG00005546 acaca,LOC107691719 other downstream 267331 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 921931 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 2141639 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 2194836 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 2315761 6608643 ~ 6662480 (+)

Expression


Co-expression Network