G153130


Basic Information

Item Value
gene id G153130
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5300769 ~ 5302198 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192831
GTGGGGAGTGACACTTCGAAAGTCAACACTTctccatttaaacaaaacaaaacaaaacaaaatcgcaacaatatatatttcctcACTTCTTTCCAAACAGCAGTGCCCACTTTAAACTTTAGGTGAAGGGCTAAGTAGGTAATGGAGCTCTTTTTGTGACTCTCTGGGCTTCTCTCATACATCTTGGAGCAAACTGATGTCTCTGGCACGCAAATACTTCTGGCTATGGGTGATTGTGGGAATGATCTTCGTCTTATTCTTCTTTGGCCTCATCTTCTTCATCATCTACAAGTGCTTCACTAGGAAAGATAAAACTCATTATACGCCGAATTCTCAAGATACACCAGGTTATGAGTTTTATTCCCGGGGCAGCCAGTATCACCCCAAACACCTGGAAGAGGAGCTGACCCCGTTACCCCCGTTACCCCCGAGGGACATAAACTTCCCAAAGCGGCCAAGTGAGTTCGACACTTTCATCAACCCCCCAGTGAAAATTGGTAAATCTGCATGctcatgttattttcattatgattattattattagatttacTCTAGTACAGTAAAATCAAcagcatatacactcacctaaaggattattaggaacacctgttcaatt

Function

NR:

description
PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192831 True 616 TUCP 0.41 4 5300769 5302198

Neighbor

gene id symbol gene type direction distance location
AMCG00005619 rabep1,LOC106603450 coding downstream 4216 5283576 ~ 5296553 (-)
AMCG00005586 NA coding downstream 32091 5249374 ~ 5268678 (-)
AMCG00005587 prkrip1,LOC107600793,LOC107691809 coding downstream 56447 5241801 ~ 5244322 (-)
AMCG00005588 crcp coding downstream 94188 5195219 ~ 5206581 (-)
AMCG00005572 tpst1,LOC107662793 coding downstream 129154 5170773 ~ 5171615 (-)
AMCG00005618 derl2,LOC106567674,LOC107735937,LOC107579789,LOC107093934,LOC107580170 coding upstream 4390 5306588 ~ 5309932 (-)
AMCG00005617 NA coding upstream 8461 5310659 ~ 5312974 (-)
AMCG00005620 NA coding upstream 15700 5317898 ~ 5337528 (-)
AMCG00005616 NA coding upstream 42311 5344509 ~ 5348268 (-)
AMCG00005574 LOC106602867 coding upstream 70263 5372461 ~ 5405899 (-)
G152942 NA non-coding downstream 769037 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 1000371 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 1040457 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 1307248 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 1508325 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 49155 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 51155 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 185111 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 346160 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 439294 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 1007898 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1431560 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1668057 3606961 ~ 3632712 (-)
G152645 NA other downstream 2210055 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 2410321 2872506 ~ 2890448 (-)
G153342 NA other upstream 779037 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 929961 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1188057 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1807020 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 2483356 7785554 ~ 7788321 (-)

Expression


Co-expression Network