G153143


Basic Information

Item Value
gene id G153143
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5353353 ~ 5355697 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192845
ATTTGGAAGGGAACATGCACATGATACAGCAGCTACGGGGGCCAAAATACAACCTCCTTTCACACAGGGCATGTTGATGTAATTCActctttattttaacagaataTTCACAGCTAAAATGTGTAAGGAAATCTCTAAATCAAGTACAGCCAAGAACTGCCACAAATCAAAGATTGCCAGTATGTCAGGGTGTAAAGTAGGGGTtttgggagaaaaacaaaatgcatacagaGCAAAACACAAACCGAAGGCACATGGAATCTGGTTCACAAGGATGGATGTCTCCGTTATATAAGCATAGCTTTGTATGAAACCTTGGACACATTTATGACTGGCCTTACAATTAAATGTCTTGTTACAGTGACTAAAAATTCAGAACCAAAATCAATGGTGGAACAGCAAACTAACTGGAGGAAATAGCTGTGTTTCTAGAAGAATATCTAAGACATCCAGTGCTTGTACATGAAAGGAAGCTGCAGCCACGTTTTGCAGGAGAGTGGAGTTTCATTTTATGTTGAAAGGGACAGTAACTCACACAGGGGAGTTTTATTACATATAAACAGGTCAAATCTTAGAACACTGccttcagaaaagaaaaatgtgaacgataaaaaaaatagatatattgtCAGGTAAATCCACTTCATTAGGAGGTGTCCATCTGTccttGTGTCTCATTGAAGAGGTAGGAGTCCTGATATTCTTTCATATACTGGGAGGAGCGGGACTCGTCCAGAAAGAGAGAGTACACTCGTTTAATGTCCTCCACCTGCACCTCTGTGCCCTGAAAAACGGAGAGAGGGGAGATTAGTGTGGGGCACAGACTTGGATGTCCGTGTCTGAcaggagagacggagagaagaCTGTGGGATATCGCTGTACAGACCCTGCGCTTGCGGCACACGAGCCCGGCGGTGCTGATCAGCTGGATGGCGTAACGCAGGGACGTCTCCAGGCCGATGCGGGTCAGGACCGTGTGGGCCTCTTCGCTGAGCTCCACGTCCTCCTCCTCGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192845 True 1016 lncRNA 0.45 2 5353353 5355697

Neighbor

gene id symbol gene type direction distance location
AMCG00005616 NA coding downstream 5085 5344509 ~ 5348268 (-)
AMCG00005620 NA coding downstream 15825 5317898 ~ 5337528 (-)
AMCG00005617 NA coding downstream 40379 5310659 ~ 5312974 (-)
AMCG00005618 derl2,LOC106567674,LOC107735937,LOC107579789,LOC107093934,LOC107580170 coding downstream 43421 5306588 ~ 5309932 (-)
AMCG00005619 rabep1,LOC106603450 coding downstream 56800 5283576 ~ 5296553 (-)
AMCG00005574 LOC106602867 coding upstream 16764 5372461 ~ 5405899 (-)
AMCG00005576 LOC106602867,LOC107597455 coding upstream 88464 5444161 ~ 5444610 (-)
AMCG00005575 NA coding upstream 105222 5460919 ~ 5467836 (-)
AMCG00005625 NA coding upstream 152555 5508252 ~ 5513394 (-)
AMCG00005606 NA coding upstream 311163 5666860 ~ 5709455 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding downstream 1008 5351353 ~ 5352345 (-)
G152942 NA non-coding downstream 821621 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 1052955 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 1093041 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 1359832 3989919 ~ 3993521 (-)
G153178 NA non-coding upstream 131612 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 292661 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 385795 5741492 ~ 5748572 (-)
G153272 NA non-coding upstream 444951 5800648 ~ 5800906 (-)
G153313 NA non-coding upstream 692433 6048130 ~ 6048470 (-)
G153130 NA other downstream 51155 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 1060482 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1484144 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1720641 3606961 ~ 3632712 (-)
G152645 NA other downstream 2262639 3071860 ~ 3090714 (-)
G153342 NA other upstream 725538 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 876462 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1134558 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1753521 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 2429857 7785554 ~ 7788321 (-)

Expression


Co-expression Network