G153236


Basic Information

Item Value
gene id G153236
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5648358 ~ 5648709 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192961
ACCCAATGATGTACGCCAGCACAGCGAGCTGGATCAGCCGGCACACTATCCCCACTCTCTTGTTCTTGACCAGAACTTGGCGAGGGGTCTCGTACTCAAAGAGAAAGTCAGAGATGGCTTCCTTCAGGAATTTGTTCATCTTACACTGCCTTCGCCTCCTGCTTCCTGAAcaactcactctctctcacactcgcCCCTGACTCATTCATGCACGGCTAAGTGTTACAGTAAGAAAACCCAGAAGtgattgttctctctctctctctctctgtctctctctctctctcacacacacacacacacacacaccgagtGACCTGAATGGGGTGGAGTTTATGGACTCCGCAAACAC

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192961 True 352 lncRNA 0.51 1 5648358 5648709

Neighbor

gene id symbol gene type direction distance location
AMCG00005625 NA coding downstream 134964 5508252 ~ 5513394 (-)
AMCG00005575 NA coding downstream 180522 5460919 ~ 5467836 (-)
AMCG00005576 LOC106602867,LOC107597455 coding downstream 203748 5444161 ~ 5444610 (-)
AMCG00005574 LOC106602867 coding downstream 242459 5372461 ~ 5405899 (-)
AMCG00005616 NA coding downstream 300090 5344509 ~ 5348268 (-)
AMCG00005606 NA coding upstream 18151 5666860 ~ 5709455 (-)
AMCG00005605 NA coding upstream 100067 5748776 ~ 5751438 (-)
AMCG00005610 LOC101160255,LOC103021402,LOC100700540,LOC105025792 coding upstream 271491 5920200 ~ 5931156 (-)
AMCG00005611 NA coding upstream 288106 5936815 ~ 5947317 (-)
AMCG00005601 supt4h1 coding upstream 421483 6070192 ~ 6072666 (-)
G153178 NA non-coding downstream 158759 5487309 ~ 5489599 (-)
G153143 NA non-coding downstream 292661 5353353 ~ 5355697 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding downstream 296013 5351353 ~ 5352345 (-)
G152942 NA non-coding downstream 1116626 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 1347960 4292030 ~ 4300398 (-)
G153248 dhx33 non-coding upstream 92783 5741492 ~ 5748572 (-)
G153272 NA non-coding upstream 151939 5800648 ~ 5800906 (-)
G153313 NA non-coding upstream 399421 6048130 ~ 6048470 (-)
G153324 NA non-coding upstream 420078 6068787 ~ 6069014 (-)
G153373 NA non-coding upstream 585419 6234128 ~ 6234359 (-)
G153130 NA other downstream 346160 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 1355487 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1779149 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 2015646 3606961 ~ 3632712 (-)
G152645 NA other downstream 2557644 3071860 ~ 3090714 (-)
G153342 NA other upstream 432526 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 583450 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 841546 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1460509 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 2136845 7785554 ~ 7788321 (-)

Expression


Co-expression Network