G153248 (dhx33)


Basic Information

Item Value
gene id G153248
gene name dhx33
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5741492 ~ 5748572 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192977
GATCCCTTTTAAACtcaattttattattgtatctgCAGTCTTTACAAGAACAAATGTGCTAATTTTACATCAAGATTAATGTAAAAAGAGGAGGCAATAATTTAAGAGCTATAACAGATGAAAGTGGACTAGTCTTGAGCAATTATATTACAAGTCACTTTATTACACTAGGGAGcacctgactttttttttttccctccctaaCCGCTCAAACGTGTAATGAAATCTGAACCATGACTTCCAGAGGGACTGCACGCTAAAGCAACTTTGACTAAATATCCGAGACACAGGGCAAAGGGCTGTTTTTTCTATATCCccatttgacttattttttctAACGGGTATAAATGTATAGAAGTAGCCAAGCTGGAGCAATATGGACACTACACTCccacaaatacaaaagtaaagaAACATTACTATTGACTCATGGACCCCTTCCTGCCTAGATTCCATGTCCAGAAGAACATCCCACTGTATGAGTAACACACGAGTGGCTGTGCATTTTATACGGCATTTGCAATAACACTGAAGTAAAAACTCCAGTCCTGAAAGTGTGCAAGGGTATCTGACAATTCTACCAACATTTTaacaggggtggggggggtgtatttatttatttgacaggcCCTGATGGTACAAAGGTGCCTAGAAAGCCTGCACGATTGATGGCCGCCGAGTTTCTGACATGGAGTCTAGGCAGGTGCGTTGGTTTGTGTTTCTCCTGCGTCCGTGTTTACTGGCACTTGACGAAGCCGCTGAGATCCTCCAGGAATTTGATGTACTCCTGGTGCTCTAGGGCGGTGCTCAGCTCCACCAGCTCGTCGGCGAAGGTGaaacacaaacctAACGCATAATAAAGTGTAGAATCAGATGGTGTGGaaatagtatttattataaatgctATATTTTACAAACTCTTACATCATTCACTACTGTTTTTTCAAACCACATAACACTTTTATATACCCATAAAGTCCCCCCTGGTCTCATAGGCTTCTAGTTTGTGCTggctgtggtttattttatacaaaatatacagaacCTGCCTTTCCAATTACAAAGTCATTTCACATCACACTTTCAAAACACCCTGTGTACATTGTTCAGGACAGCTAGCCCCATTTTAtaaccacagaaaaacaaataaaacaggatGGGTCCAAACAATATTTACTATAACTGCAACTTTAAACTGCTGTCAAATTAGATTATTAGATTTGTTAAATTACAAGATACACAGGCCAACTAAGTGTattcctgttgtttttattgtaaaaaaaataatagagatataattttaatacatttgaattccCTAGAGTAAATCCATTCTGCTCTTTTCTACTTAATCAGCTGAACGTGTATCAAGGTGGATgctgaaaaaacataaaaccaatgcgTAACTGCAGGGATATTAAACTCACTTgcagtcatttttcttttaatttcattgtaCGAAGAACACAAAGGATGGTTTGTTAAAGTCTTAACTATTTACATTggcttttaatgatttaaaaaatgtactccAATGACCTTGTGGccttgtaaacattttacaaacattcTAAGTCACGTTGTAAACAGATTGTGTTATCCCTGCTTCTTCAACTATATTTTCACTATTActtatatcattttaataataaaataagtaatccaaaataataataataatagaaggtTTGAGTCCTGAGATTTATTACTGGACCTGCTTTGCTGTAAGAGATATGAATCCTTACTTTTACAATGAAAGGTTTAGGATCTGAAAACGTAAAATGTGACGTGAAGTTTACGGAACGTACTGCCACTGATTGAGAAGAGAGTAAACGTATCTGATTAGTATGATAGCTGAGAAACTAGGCTTTTGTACAATTTTGTCTACTGACTCCTAACTTAAACATGAAACTTGAGAAGGGGAAAAAGCTTTCGTAGAAGTAAATTAGGAAACCTAAATAATCCCAATCAACACCGCCTAACAAGGCTTAAATCAGTGTTTACCACCGACAATGTACACCTTGTAACACAACATACCAGTTCTCCAATTCAGATACAGTGTAGTGAAAAACCTGAGgaattgtgtaatttattttcactgtaactCCATGCAGTGCATACCTCTCTAATACTACTTTACATGGTTAAGCTAGTATTGTTTAACAGTGCCTGACAGATACAAAAGGTAAATTAATACCAGAGATGTCCCTAGTCTATTTAAGGACCAGTGTGATGTCATTGTGGTCCAGCACCACGTGTGAATTCTGGTCAGTGTGAAACTAGTGAAGTTTAGCCACATAAAGTGCAAGATGACATGCAGTTAAAGATTTAAAGACTTTATCGTTTGCAGTTGAGTGTTAATTGTGGAACACAAAACAGGGTGAAGTAGTCCTATAGCTCTCTCAATGTGGAATTGCCCCCAAAACCTGCTTCGGTCTACCACAATGACTGAACACAACAAATGCCTCAAGACAGCAGATGCTAGTTGGTTCTAGGTTAATTAGTCTTCTAGTGGCTAATCTTTCATGGAGTCCCAATTCTATTGTATCTTGTGGTATAGGGCTAGGATGAGGGCAAAATGGCCAACCTGGCCATTTCTGACTGACAACAAAGCCACCGAGAGCCATGGCTAAAGTCTTCCATTTGGAAAGGAAGCTGTGTCAGGGTTTGTGACTCTTGCAATATATCAGGGAAGAAATGCATGCACACAGGCTTGCTTTTATTCAACAGTcgaatatttgttttcttagacATAGAGGATCGAGTGTTGATATACTTGAGTTTGTCAAATATAGAGCAGTGGAAAAACTCCATTAAGAAACTTTTGAACTGAAAGCTACAGTAGCCAAACTGTAAGCTGAAATCAGACTCACAAGCCACATCCTGTTTAGGGTGAAAGCTCTGCCTCTCAGTCGCTTGGTGTGTCAAACAtcatctgtatttctttttgtttgtcacAGAGACTTTCAGATGGGACTTTACTGAATCCACATAAGAGCCATCCCTTCCCCATCTCTGACAGCAGAATTCaaccatttttttcttcataagaTATTCAATATGATTGGTGGTCACCTGCTGCCGATTTCCCcctgagagatagagagatctGAGATGCCACAAAAGGCTCAGTGaagcagaggtcagaggtcacccATACAGACGGATGACCTTCGTTGAGACACAGTTACACAGAGTTAAGGGCCACATATTTTTCAGCCTGGAATAAGCTTCACAATAGTCAGCTTTACTGCCACACATTGGACGCCTCCAGGTTCGAGCTCTTTAGCTTCCCGTCTGAGACTCAACCTATGGTTCCCGATCCGAACGCCACACAGACAGAATTCCCGAGCATCTCCAACTTCCAGTATCCATCCTCAGTGTCAGGTGCTTTGTTTGTCCTGCAATTCTGGTCACTGgtaagtaaaagaaaaaacaagggGTGGACAAAAAGGTGAGGCTCTCATGTGGTGCGCACGGGGGGAAAACTACAGGAGGCCGTGACTCTTTGCAGACGTGTCTTCTGTGCTATTTTTGGCGAAACGCGCAGAGAGAAGCTCGAGACGACCGTGGTTAGCTCTTGACAGCCCGCAGTTTCCGGCGGAAGTACTCGGGGGCGGCCTCGTGCAGCCACTCGGGGTCCACCAGGCACAGGTCTCGCATGTAGCACTTGGAGGTGTGCAGGAGCTCATTGAAGACCACGTAGGCCGGCTTGGCCTGGAAGAGCACCGAGGAGGGGTGGATGGCCACCGGCTGGTGGGTGTCCAGGGCCGTGTAGCTGCCGTCGGGCTGCAGCTCGGCCGCGTTGGTGAAGAGCCCGTGGGCCAGGCATCGACGGATATTGCCCGTTTCGGTGCGGGAGGACTCCATGGACATCCCCA

Function

symbol description
dhx33 Predicted to enable RNA binding activity. Acts upstream of or within regulation of transcription by RNA polymerase I. Predicted to be active in nucleolus. Is expressed in central nervous system and digestive system. Orthologous to human DHX33 (DEAH-box helicase 33).

NR:

description
PREDICTED: putative ATP-dependent RNA helicase DHX33

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192977 True 3881 lncRNA 0.42 2 5741492 5748572

Neighbor

gene id symbol gene type direction distance location
AMCG00005606 NA coding downstream 32037 5666860 ~ 5709455 (-)
AMCG00005625 NA coding downstream 228098 5508252 ~ 5513394 (-)
AMCG00005575 NA coding downstream 273656 5460919 ~ 5467836 (-)
AMCG00005576 LOC106602867,LOC107597455 coding downstream 296882 5444161 ~ 5444610 (-)
AMCG00005574 LOC106602867 coding downstream 335593 5372461 ~ 5405899 (-)
AMCG00005605 NA coding upstream 204 5748776 ~ 5751438 (-)
AMCG00005610 LOC101160255,LOC103021402,LOC100700540,LOC105025792 coding upstream 171628 5920200 ~ 5931156 (-)
AMCG00005611 NA coding upstream 188243 5936815 ~ 5947317 (-)
AMCG00005601 supt4h1 coding upstream 321620 6070192 ~ 6072666 (-)
AMCG00005598 hpda,LOC108413266,LOC108260398 coding upstream 410153 6158725 ~ 6170298 (-)
G153236 NA non-coding downstream 92783 5648358 ~ 5648709 (-)
G153178 NA non-coding downstream 251893 5487309 ~ 5489599 (-)
G153143 NA non-coding downstream 385795 5353353 ~ 5355697 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding downstream 389147 5351353 ~ 5352345 (-)
G152942 NA non-coding downstream 1209760 4531440 ~ 4531732 (-)
G153272 NA non-coding upstream 52076 5800648 ~ 5800906 (-)
G153313 NA non-coding upstream 299558 6048130 ~ 6048470 (-)
G153324 NA non-coding upstream 320215 6068787 ~ 6069014 (-)
G153373 NA non-coding upstream 485556 6234128 ~ 6234359 (-)
G153374 NA non-coding upstream 485976 6234548 ~ 6234858 (-)
G153130 NA other downstream 439294 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 1448621 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1872283 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 2108780 3606961 ~ 3632712 (-)
G152645 NA other downstream 2650778 3071860 ~ 3090714 (-)
G153342 NA other upstream 332663 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 483587 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 741683 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1360646 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 2036982 7785554 ~ 7788321 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G370314 NA non-coding NC_048569.1 CM023223.2 14176471 ~ 14177082 (-)
mexican tetra (Astyanax mexicanus) G305619 dhx33 non-coding NW_019172844.1 APWO02000113.1 1541903 ~ 1546429 (+)