G153487


Basic Information

Item Value
gene id G153487
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6560939 ~ 6563570 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU193273
GTAAACAAAACAGAGCCGGCTCATACGTCATCAGCGCACACCACTCACACGGCAGAAAAACAACCTCAGTGTCCAATCACAGAGCAGGGAGGCGGGACCAACTGCCTCAGCCTTCTCGAATTTTCCAGACATTTCTCATGTCGACTAGAGATATGAGTCcgcggtttttattttaacacaattatgaaaaacaaatccacaccATGAATCGAAAACGCGTCTGCGCATGACCATAGTGATTCTGGGCACGAATATGATTATTGGTAAAAATAGAATATAGGTTTTAAAAACGCGCACTACTTTTCACTGCGGATGAATATGGTTGTGATGGCACTGCAACGTCATGACGCTGTGTTTGTATAAAACAGGTTCACCGGGGACGTACAGCAGAGTCTGAAGACATTCAGAGAACCGCTTTTATATCAAGATTTAGATTTTGACGGCTACCGAAACtATTGAAAGATGCAGATCTTCGTCAAGACCCTGACGGGCAAGNNNGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACATTGCACCTGGTCCTGCGACTGAGAGGAGGTCAATGACTCTTTCCAAATTGACAGCTTGCTTGTTGCATTTTCCCCTACCCCAAACTTcacttttctaattattttgcattcctTTCAGTGTCTTGAGTCTAAAATGTCCAAATAAAAGATGTTAAAGTTAAAACTGTTTCTTCTACTTTTCT
>TU193274
GTAAACAAAACAGAGCCGGCTCATACGTCATCAGCGCACACCACTCACACGGCAGAAAAACAACCTCAGTGTCCAATCACAGAGCAGGGAGGCGGGACCAACTGCCTCAGCCTTCTCGAATTTTCCAGACATTTCTCATGTCGACTAGAGATATGAGTCcgcggtttttattttaacacaattatgaaaaacaaatccacaccATGAATCGAAAACGCGTCTGCGCATGACCATAGTGATTCTGGGCACGAATATGATTATTGGTAAAAATAGAATATAGGTTTTAAAAACGCGCACTACTTTTCACTGCGGATGAATATGGTTGTGATGGCACTGCAACGTCATGACGCTGTGTTTGTATAAAACAGGTTCACCGGGGACGTACAGCAGAGTCTGAAGACATTCAGAGAACCGCTTTTATATCAAGATTTAGATTTTGACGGCTACCGAAACtATTGAAAGATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193273 True 735 lncRNA 0.43 3 6560939 6563570
TU193274 False 515 lncRNA 0.45 2 6562176 6563570

Neighbor

gene id symbol gene type direction distance location
AMCG00005672 NA coding downstream 15059 6528567 ~ 6545880 (-)
AMCG00005671 NA coding downstream 33319 6502453 ~ 6527620 (-)
AMCG00005675 NA coding downstream 63278 6497360 ~ 6497661 (-)
AMCG00005673 NA coding downstream 74689 6481066 ~ 6486250 (-)
AMCG00005651 NA coding downstream 118573 6433714 ~ 6442366 (-)
AMCG00005665 NA coding upstream 7487 6571057 ~ 6575631 (-)
AMCG00005664 NA coding upstream 19129 6582699 ~ 6594894 (-)
AMCG00005644 NA coding upstream 126881 6690451 ~ 6704360 (-)
AMCG00005646 NA coding upstream 143088 6706658 ~ 6711986 (-)
AMCG00005645 NA coding upstream 159377 6722947 ~ 6743221 (-)
G153379 NA non-coding downstream 303767 6240402 ~ 6257172 (-)
G153375 NA non-coding downstream 325530 6235183 ~ 6235409 (-)
G153374 NA non-coding downstream 326081 6234548 ~ 6234858 (-)
G153373 NA non-coding downstream 326580 6234128 ~ 6234359 (-)
G153324 NA non-coding downstream 491925 6068787 ~ 6069014 (-)
G153514 NA non-coding upstream 83746 6647316 ~ 6662496 (-)
G153586 NA non-coding upstream 371860 6935430 ~ 6935676 (-)
G153638 NA non-coding upstream 489235 7052805 ~ 7053559 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding upstream 616058 7179628 ~ 7202286 (-)
G153681 NA non-coding upstream 714934 7278504 ~ 7278765 (-)
AMCG00005674 NA other downstream 64368 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 326911 6232159 ~ 6234028 (-)
G153342 NA other downstream 478073 6081235 ~ 6082866 (-)
G153130 NA other downstream 1258741 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 2268068 4284717 ~ 4292871 (-)
AMCG00005685 NA other upstream 545648 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 1221984 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 1435766 7999336 ~ 8001405 (-)
G153806 NA other upstream 1528178 8091748 ~ 8124685 (-)
G154142 NA other upstream 2526852 9090422 ~ 9092573 (-)

Expression


Co-expression Network