G153681


Basic Information

Item Value
gene id G153681
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7278504 ~ 7278765 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU193539
GGGAATCACATTCTAAAATTTGCTACTCAGTAATGaatgaattgtattaattattaacatatGCAAATATCagggacacagatggaaattgggtttcaaggcagtcaagacagaaaacaggagacacttcttcacaaagagaggtgtcacaatctgaacaaactccccagcaatgtggtagaagagacaatttgggaacattcaaaaatagactggataggatccttggatcactaagttattaatggataccaaatgagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193539 True 262 lncRNA 0.37 1 7278504 7278765

Neighbor

gene id symbol gene type direction distance location
AMCG00005688 cltc,cltcb,LOC108443353,LOC105907438 coding downstream 2024 7243950 ~ 7276480 (-)
AMCG00005687 NA coding downstream 45629 7229906 ~ 7232875 (-)
AMCG00005689 NA coding downstream 62861 7215353 ~ 7215643 (-)
AMCG00005683 rps6kb1b,LOC108443350,LOC107701421 coding downstream 109115 7157197 ~ 7169389 (-)
AMCG00005684 LOC107747042,LOC107744626,LOC107699258,LOC107693951,LOC103378375,LOC104941230,LOC107726096,LOC103364401 coding downstream 170730 7102290 ~ 7107774 (-)
AMCG00005659 NA coding upstream 2855 7281620 ~ 7292372 (-)
AMCG00005698 NA coding upstream 188926 7467691 ~ 7468500 (-)
AMCG00005691 caln1,LOC107716051,LOC107659935,LOC107582596,LOC107672359,LOC107554278,LOC103034584 coding upstream 542429 7821194 ~ 7828552 (-)
AMCG00005692 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107672359 coding upstream 573901 7852666 ~ 7869220 (-)
AMCG00005718 NA coding upstream 617581 7896346 ~ 7901372 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding downstream 76218 7179628 ~ 7202286 (-)
G153638 NA non-coding downstream 224945 7052805 ~ 7053559 (-)
G153586 NA non-coding downstream 342828 6935430 ~ 6935676 (-)
G153514 NA non-coding downstream 616008 6647316 ~ 6662496 (-)
G153487 NA non-coding downstream 714934 6560939 ~ 6563570 (-)
G153742 NA non-coding upstream 596022 7874787 ~ 7875042 (-)
G153778 cct6a non-coding upstream 703265 7982030 ~ 7983931 (-)
G153779 NA non-coding upstream 705475 7984240 ~ 8021640 (-)
G153980 NA non-coding upstream 1295427 8574192 ~ 8588222 (-)
G154010 NA non-coding upstream 1451038 8729803 ~ 8730149 (-)
AMCG00005685 NA other downstream 132697 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 781933 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 1044476 6232159 ~ 6234028 (-)
G153342 NA other downstream 1195638 6081235 ~ 6082866 (-)
G153130 NA other downstream 1976306 5300769 ~ 5302198 (-)
G153733 auts2 other upstream 506789 7785554 ~ 7788321 (-)
AMCG00005704 NA other upstream 720571 7999336 ~ 8001405 (-)
G153806 NA other upstream 812983 8091748 ~ 8124685 (-)
G154142 NA other upstream 1811657 9090422 ~ 9092573 (-)
G154250 NA other upstream 2146525 9425290 ~ 9434940 (-)

Expression


Co-expression Network