G153733 (auts2)


Basic Information

Item Value
gene id G153733
gene name auts2
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7785554 ~ 7788321 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU193605
TTTTTAgttcacattttttaataacatggCACAATTTACAtaacacaagttttttttttttaatgaggaaCATGCTGAAGATTCAGAGAGTCGCttcactgcttttttttctttacatttgacCTAGAAAggacttcattttttttatttttttattttttaaacgtaCATGATAAACAGCAAAAAAGTTCTGTTAATAACAATCTCTTTGCAATACTCATTAACTACCACTACGGTTCcagtgtacattttattttttgtttgttaaaaaaacactgcacaacaTCTGGAGTTCACATAGTTTGAAGCGCACAACTAAACCTTCAGTTGACTACTAAAATAGATCTCTGCTCATTAGAAACAAAACTGTCCATCGTTAGCTTTTTTCTTTCGTTTTTTCTGTAGATACAACAACTTAGGATAGCACTTTGATACACTGTTAGACCAACGgaactaattttattttcatacacatAGTTTACACTCCTTTAGAAGAAATGTTTCCTGTTGtcttttgctttttcaaagTCATATTCTCTACAAACAGAAAGGGCCAAAGCAATCTTAATTGGGGGAAATAATGGGGCAAACTTCCTGGAAAAGATCCTAACTTTTCCTACAGAGAGGTGACTTTGGGATTgggatttttgtgttttaaattgattaattttcaaaaaaaaaaaaaaaaaaaggattgtcACCAGCAAATCTATCATTTTCCATATAGGTCTCTATCACCTTGCTAACTTTAGTTTTAGATTATCTGAGAGGAAACAATACATtaagatgataaaaaaaacagataaaccTTGACGTCTTTCTGAATCTGGAGAGAATATGGCTCTGTTGAGTAAGTTTGGGTATTGGAAAGGCTCCTTTGAGAAATGCCGGCTCTTGCGGTAAAAGCCAAAACATTCATTGCATAGTTGGAGGGGTGATCTGTGAAACGACACTTACCTTGCACAGCGCGAAGCAGGCTGTGAGAACAAATCATAAAATCTGCAAATAGCACAAAGTAAGAAGTTCTGGACTCCCGTTAGTTCACTCCTCTATGTACATTTGTACAAAGTAAAGCTTGTACCTTTTAAACCCCAGACACAGGCCTGTCTCTGTACACTGATATCTACAAGAgcctgcctcctcctcctgcaaCGAGTACCTGTACATCCCGAACAACCGTCTTTCCCAGGGTGTCTATTTGCCGTTTTGTTCCACTAACCTCCCGCATTCCCAAGAACAAaccttttttagtttttctgtacAAATAAAAGGATACACAcgaaaacagaaaagcaagttGGCTAAAACATATGtaaatttttttctttttgagtttttccctctccttttttttgttgtcttttttgtcttttttttttttttttttacaaaaacccATAATGCAATGTTCCTTTTTTGCACATATTGTATAGACAGCTATGATACACACGCGTCGCCCGATCCTAAGTGCTCGGTAAAGTCCCCTGACGCTCGGGCACTCGGTACGCTCTGTCTGCTCACCGCGCCTCGATGTCTTTGTGAGTGTGCGACGGTGGCCTGTCCCTAATGTCTGCGGTCAAAGGCGTCCTTCGTGGAGAATTGGGGCGAGCCCCCAGCGTGGGGATCAGGGGGGGGGGTGCGCTCAGGGAGGCCGTGGGTGGGTTCTTGTTGAGGATGCCATTCTGGTGCACCGACGAGGGGCTGACCCTGGGGtagtgcatgctgggaaggcCCGGGGTCATGAGGCCGGGGTGGTGCAGGTGGCCGTCCAGGGAGGGGTGCATGGGGTGCAGCCGGGCGTGTTCGTACTCCTCCCGCAGCATGTGCAGCCGCTCGCGCTCCTCCAGGTGACTCGCCCGCTCCTGCTCCCGCCGCTGCTCCACTGCCAGCGCGTGCCCGTGCTCCCGGTTGTAGTCGTGGGGCTCCCGGTCCCTGTAGGAGCGCTCAGCCTCGTAGAGCCGGGGCCCGGCGAGACGGTGTAGGGGGTCGCTCCTCAGCAGGAAGTCTCTGGCCAGGGGGTCCCGTCGATGCAGGTCCAGGCCCCGGTAGGGGTCCCTGAGCGGGTCCCTCATGGGGTCCCAATGGAAGGCGGGGTAGGGGAAGCGCTCAGCGCCGGGGATGGGGCTGATGCCCATGAAGGGCGCCACCACGCGAGTCCGCTCCAGCCCGCTGATGCTGTTCATGGGGTGGACCCCCGCCATGCCCATGTGCATCGGCATGGAGGCCATGGAGGAGGGTGGGTGCACGCTGGGGGCTGGTGGCATCTGGGGGTGCTCGGGGGGCCGGTGTACCGGTGGGGGGACCTCAACGGGCGCCTCCTGCTCCTCCTTGCGCTCCTCCTTCACCTTCACCTCGGCGCTCTTCTTCGGCAGCTCGTACACCGCCTCGCTCTTCTTCTCCGCCTCACGGCTCAGACTGCCGTTGGACCGGGACACGTCCAGCCCCGGCGGCCGCACGTACGGAGACATCACCCGGCTCACCTGCTTACCATCGTCTGCCGTGCGGCTCTCGTGGATAGTGGGCGGCTCCTTCTCCACCACATGGCTCTCCTTCAGCTTGTGCTCATCGGGCGCGGGGTCCTTCCAGGAGTCCGGGTGGTCCCGCTCCCTCTCCTTCGGCTTGTCCTTCTCACGGAGGTCGTTGGTCACGTGCCCTCGGGGGGGCTCGGTGGGGGGGCGGCTGTGACCCAGGGAGTTGATGGGTGCCGGGGAGGGGTGGCTGTGGTGCCTCTTCTCCATGGCATCC

Function

symbol description
auts2 Enables chromatin binding activity. Acts upstream of or within positive regulation of histone H3-K4 methylation; positive regulation of histone H4-K16 acetylation; and positive regulation of transcription by RNA polymerase II. Predicted to be located in growth cone. Predicted to colocalize with actin cytoskeleton. Implicated in autosomal dominant non-syndromic intellectual disability 26.

NR:

description
PREDICTED: autism susceptibility gene 2 protein isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193605 True 2745 TUCP 0.51 2 7785554 7788321

Neighbor

gene id symbol gene type direction distance location
AMCG00005698 NA coding downstream 317054 7467691 ~ 7468500 (-)
AMCG00005659 NA coding downstream 493182 7281620 ~ 7292372 (-)
AMCG00005688 cltc,cltcb,LOC108443353,LOC105907438 coding downstream 509074 7243950 ~ 7276480 (-)
AMCG00005687 NA coding downstream 552679 7229906 ~ 7232875 (-)
AMCG00005689 NA coding downstream 569911 7215353 ~ 7215643 (-)
AMCG00005691 caln1,LOC107716051,LOC107659935,LOC107582596,LOC107672359,LOC107554278,LOC103034584 coding upstream 32873 7821194 ~ 7828552 (-)
AMCG00005692 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107672359 coding upstream 64345 7852666 ~ 7869220 (-)
AMCG00005718 NA coding upstream 108025 7896346 ~ 7901372 (-)
AMCG00005715 LOC102799651,LOC107659914,LOC104957508 coding upstream 130358 7918679 ~ 7950134 (-)
AMCG00005716 NA coding upstream 165810 7954131 ~ 7966260 (-)
G153681 NA non-coding downstream 506789 7278504 ~ 7278765 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding downstream 583268 7179628 ~ 7202286 (-)
G153638 NA non-coding downstream 731995 7052805 ~ 7053559 (-)
G153586 NA non-coding downstream 849878 6935430 ~ 6935676 (-)
G153514 NA non-coding downstream 1123058 6647316 ~ 6662496 (-)
G153742 NA non-coding upstream 86466 7874787 ~ 7875042 (-)
G153778 cct6a non-coding upstream 193709 7982030 ~ 7983931 (-)
G153779 NA non-coding upstream 195919 7984240 ~ 8021640 (-)
G153980 NA non-coding upstream 785871 8574192 ~ 8588222 (-)
G154010 NA non-coding upstream 941482 8729803 ~ 8730149 (-)
AMCG00005685 NA other downstream 639747 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 1288983 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 1551526 6232159 ~ 6234028 (-)
G153342 NA other downstream 1702688 6081235 ~ 6082866 (-)
G153130 NA other downstream 2483356 5300769 ~ 5302198 (-)
AMCG00005704 NA other upstream 211015 7999336 ~ 8001405 (-)
G153806 NA other upstream 303427 8091748 ~ 8124685 (-)
G154142 NA other upstream 1302101 9090422 ~ 9092573 (-)
G154250 NA other upstream 1636969 9425290 ~ 9434940 (-)
AMCG00005850 NA other upstream 2507278 10295599 ~ 10352782 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G425816 NA non-coding CI01000304 null 12686128 ~ 12688600 (+)