G153778 (cct6a)


Basic Information

Item Value
gene id G153778
gene name cct6a
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7982030 ~ 7983931 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU193660
ACAGATTCAGAAATGCTCTTGAGTGCAACAATATTAAAACCTCATGAAACAAACTTACGAGAGTGTGCTCATACACAAGACCAGCATGACCCAAGCAGTCTGGCGTGAGGTCATCCACAGAGTTCATAGCAATACCTCCGCAGGCCAGAGTAAGTCTCTCCATATTTCTCCGCTTGGCTCTGCGAAGGGCGACAATCCCTTCTTTTGCAAGTGCGTCTAAGGAAAATGGATCGATCCCCTTCTGGTTAAGCACGACAAATCCTTTAGAATCATCAGTGCACACTTTGTTCTTCAGATCAATTATTTTCTTGACTCGCTCTTCGATGAACTTCCTCTCTGCTTTTACGAGCTTTTCCCTCTCGTTGGCACTCTTGTAGAAAAACCCAGAGTTCACttcaGTCTTCTCATATTCCAGGGACACGTTGCACGTCAGAATGAAAGCGTCTTCAACCCTCTTCTTCATATCGGGATGTCGAGCACCATGATCCAAGACCAGTCCTCTGATCAGGGTTGTGTCGCTGTCTGTCTTGTGTTTCATCTCCATGATCTCCACCATGAAGAGGTCAATAGGCTCGTTAGGCTTCTGGATCGCAAGAACAGCATCAACCACGGCCTGGAGACGTGTGGAAACACTCGTTAAAAAAGAGCGAGACTCAATTGTCAGGAATCACTCTCTAATGGCCAGAAATGC

Function

symbol description
cct6a Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be part of chaperonin-containing T-complex. Orthologous to several human genes including CCT6A (chaperonin containing TCP1 subunit 6A).

NR:

description
PREDICTED: T-complex protein 1 subunit zeta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193660 True 691 lncRNA 0.46 5 7982030 7983931

Neighbor

gene id symbol gene type direction distance location
AMCG00005717 psph coding downstream 4250 7976058 ~ 7977780 (-)
AMCG00005716 NA coding downstream 15770 7954131 ~ 7966260 (-)
AMCG00005715 LOC102799651,LOC107659914,LOC104957508 coding downstream 31896 7918679 ~ 7950134 (-)
AMCG00005718 NA coding downstream 80658 7896346 ~ 7901372 (-)
AMCG00005692 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107672359 coding downstream 112810 7852666 ~ 7869220 (-)
AMCG00005702 phkg1,LOC107677094,LOC107747678 coding upstream 5425 7989356 ~ 7999100 (-)
AMCG00005701 abhd11,LOC107715343 coding upstream 39601 8023532 ~ 8025712 (-)
AMCG00005703 LOC108424094,LOC105905016,LOC103377858 coding upstream 53097 8037028 ~ 8066223 (-)
AMCG00005734 NA coding upstream 119014 8102945 ~ 8104214 (-)
AMCG00005733 NA coding upstream 120535 8104466 ~ 8107046 (-)
G153742 NA non-coding downstream 106988 7874787 ~ 7875042 (-)
G153681 NA non-coding downstream 703265 7278504 ~ 7278765 (-)
G153678 vmp1,LOC105021956,LOC107728773 non-coding downstream 779744 7179628 ~ 7202286 (-)
G153638 NA non-coding downstream 928471 7052805 ~ 7053559 (-)
G153586 NA non-coding downstream 1046354 6935430 ~ 6935676 (-)
G153779 NA non-coding upstream 309 7984240 ~ 8021640 (-)
G153980 NA non-coding upstream 590261 8574192 ~ 8588222 (-)
G154010 NA non-coding upstream 745872 8729803 ~ 8730149 (-)
G154126 NA non-coding upstream 1003350 8987281 ~ 9024879 (-)
G154150 NA non-coding upstream 1111740 9095671 ~ 9108363 (-)
G153733 auts2 other downstream 193709 7785554 ~ 7788321 (-)
AMCG00005685 NA other downstream 836223 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 1485459 6490255 ~ 6496571 (-)
AMCG00005628 LOC107090330,LOC102220786 other downstream 1748002 6232159 ~ 6234028 (-)
G153342 NA other downstream 1899164 6081235 ~ 6082866 (-)
AMCG00005704 NA other upstream 15405 7999336 ~ 8001405 (-)
G153806 NA other upstream 107817 8091748 ~ 8124685 (-)
G154142 NA other upstream 1106491 9090422 ~ 9092573 (-)
G154250 NA other upstream 1441359 9425290 ~ 9434940 (-)
AMCG00005850 NA other upstream 2311668 10295599 ~ 10352782 (-)

Expression


Co-expression Network