G154142


Basic Information

Item Value
gene id G154142
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9090422 ~ 9092573 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU194148
aaaaaaatgacaacgGAATTCCTTACAAGTGTTCTTCAAACCAAAACAGATGACTCCATTTTAAAAGAGTAATGAACTTAATTGGCAGTCTCGCCAACTATTTATCTGATCcgattgctttttaaaaacaaaatggaaacgGTGAACTCTCACAAGTCAAGACACGAGAACTGCCAATAGGAGCAACTTATATGatcaatttactttttattgtaaatCCTGGCTGGTTGATTCAAAGTGAGTGTTCAACCTGCATGTCAAACCACAAACCTTAACTGCTTGTAGTAGCTGAAGTGATAGATTTGGGTTCCTTTCCCACATGGTTAATCTTTTCAGAGTGACAAAAGATATAACATTAACAAAAGTAGTGCATACccttataaaataaagtaccttttatttgtgttgtataGTTTGGATTGAGAGGATAAGCTTCATCTGCTACATCTGTGGATGAACTTTAGCACCTTTTGTAACTGGCAACGATAGTAGTTTTGCCATACTAGCTGGAATAAAAGCCTGCCGACATGATTTTGAAGTAATGGAATAACACTGGAAAGTAAGTTCTTTTCATAAAggattcataataaaataaaataaaaacgtctCTTAACTTGAGCACATTAATCAATTGCCGAGACATACCAAACAAAGTAATGCACATTCAACCAATACAAAATGAGACATGAATGCAGGGAAGATAATATAGATACCCAAACTCAATCTGATAAAACAAACTTATTTGCATCAGATCCTTATTCCAGTCCTGTAAGATGACGAACACCACCATGGCATTACACAGATGCAGAGAGGGAACTACGAGACCACAGCCGCCTACAGAGCGTCTTCACAAGAGACAAGAAAGATACAAGACTcagataataacaataacaataataagaggTTATTTTATGCTGAAAACAAGACACAGTATTTGAACCAAGAGAGAAGGCAAGGAAATATGACAGGCATGTTCTGTTAAtctgttctctccACTTGCCTCCTGCCTTTCGAAAGAAGCCGTACAAAGGCCAGACCCAAGACAGAGGGCAGTgtctgcgtgtgcgtgtttttgtgtgtatatctgaACACCCATTCTTTAAATACCTCGCAAATTCAACCTCTGGAAAAAGGGACCTCTCGAGGGAGTGTATTTCTGGTACAAAAACATAATGGGTCAACGTTGGAAGGTCTTTAATTTAGTCTTGTATACAACTTCACTGACATTTGCGTGGTGCAGTGTTTTAATACAGAAGTCCAAAGATCGAAGAGGCCAGCAGTTCTAGTCTCCAGGGTGGTGCGACGGGGGCGACCTCCGGTCTTTCTCGTGGGTCCGGACCGGTGAGCAAGGTTCGCTTCAGAACGAGGGACAGGGGCTGCAGGACAGGCGAGGCTGTCGGGTGAACAAATAGAGACACTGCAAAACAAGAGGATGCCATCgtactgcaaaacaaaacaagaacagaatGGGAACCAAGAAACCGACAAACACTGAGTTAAGGGTCTTCCGCTTGAGATGTGTACACTTATGATCCAATTAGGGATCGGGCACCCGAGCTGCACAGCCCCACGGAGTTGGAGGGATGCAGGGAAAGCACAAGAAGTTATGCTGGATGTTTGGCGCAGTCTTAAAGTCTCTCTCGGTGCTCCAGGGAGTTTGTATCGGATGATCGGAGAAGTCACGGAGGGCTCGCGTAGGAATGGGTAAGGTTTGTGCCGCGGTGGTTGAGAGTCTGTGCCCCAGAGCGAGGGTGTGGGAGGGAGCGGGCGGCGGCGGGGCCTGGAGAGGGGATAGAGGAGCGAGTCCTCCGTCtgccccgtctctctctctctctctctctctctctcaggagtcGCTGTCAGAGCCGTTGCTGCTGTCTCTACTGATCTCGATCTGCAGCGAGGGCAGGTTGTCCAGGCGGCTCTTCTTCTGGTGggtcttctccttctccttgaTCATGGCGCCCCACACCCTCTGCAGCTCCGTGTCCTCCTCCTCGGCTCCCGAGCCCGCGCTATCCCCCCTGGCTGCCGCCGCGCTGCCCGGCGCCGTCGTCCCAGCCGGCGACCTCTTCACCGGCACCTTGTCCTTCTGGCTGGAGCCGAGCCTGCTCCACAGACTGCTCActg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194148 True 2130 TUCP 0.47 2 9090422 9092573

Neighbor

gene id symbol gene type direction distance location
AMCG00005747 LOC107744803 coding downstream 36996 9043131 ~ 9053426 (-)
AMCG00005748 NA coding downstream 59744 9027129 ~ 9030678 (-)
AMCG00005744 NA coding downstream 156964 8906411 ~ 8933458 (-)
AMCG00005743 LOC106523455 coding downstream 195107 8886096 ~ 8895315 (-)
AMCG00005797 NA coding downstream 266386 8821543 ~ 8824036 (-)
AMCG00005776 nsrp1 coding upstream 89942 9182515 ~ 9192061 (-)
AMCG00005778 NA coding upstream 101859 9194432 ~ 9201293 (-)
AMCG00005779 NA coding upstream 111342 9203915 ~ 9206461 (-)
AMCG00005777 NA coding upstream 181212 9273785 ~ 9282740 (-)
AMCG00005786 NA coding upstream 241486 9334059 ~ 9339730 (-)
G154126 NA non-coding downstream 65543 8987281 ~ 9024879 (-)
G154010 NA non-coding downstream 360273 8729803 ~ 8730149 (-)
G153980 NA non-coding downstream 502200 8574192 ~ 8588222 (-)
G153779 NA non-coding downstream 1068782 7984240 ~ 8021640 (-)
G153778 cct6a non-coding downstream 1106491 7982030 ~ 7983931 (-)
G154150 NA non-coding upstream 3098 9095671 ~ 9108363 (-)
G154157 blmh,LOC106612652 non-coding upstream 36197 9128770 ~ 9139826 (-)
G154234 git1 non-coding upstream 232949 9325522 ~ 9330533 (-)
G154235 NA non-coding upstream 238770 9331343 ~ 9332033 (-)
G154237 NA non-coding upstream 251182 9343755 ~ 9393333 (-)
G153806 NA other downstream 965737 8091748 ~ 8124685 (-)
AMCG00005704 NA other downstream 1089017 7999336 ~ 8001405 (-)
G153733 auts2 other downstream 1302101 7785554 ~ 7788321 (-)
AMCG00005685 NA other downstream 1944615 7109218 ~ 7145807 (-)
AMCG00005674 NA other downstream 2593851 6490255 ~ 6496571 (-)
G154250 NA other upstream 332717 9425290 ~ 9434940 (-)
AMCG00005850 NA other upstream 1203026 10295599 ~ 10352782 (-)
AMCG00005862 NA other upstream 1450961 10543534 ~ 10551355 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 1645971 10738544 ~ 10752114 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other upstream 1751268 10843841 ~ 10912745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_01666458_01679245 NCBP3 coding CI01000006 null 1666241 ~ 1679917 (+)