G154473


Basic Information

Item Value
gene id G154473
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10419906 ~ 10489854 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU194560
cacaacacacacacacacacacacacacacacacacacacacacacacacacacacacccctgtgAAGCTCTACTGGAGACAGTGCTGCCGGGTTCGAGTCTGATCAgctctcctttctttcttacAAGTAATAACGGATGTTGTGTGTGGTGGTTATAGGGTCATGAGGGTGGGGCTGTGTTACTGCACCCCCTGACCCCAGCACAAGACCCAGTCTCATtcagagctcaggtggaattaACACCAGGAaccctgtactgtactggactgtagcACTCCAGAACCAGGGCTGTACTGGACTGGGTCAGGGTTGTCCAGAGGTTACAGGGCTCTATAACATCAACATTCAGCTAAAAAATATCACCTTCCTCCTCcagtttaaacacaaacacatcccaGTCACACCCAGTCCAGTACAGCTCTTGCCCAAGTCCAGTTCTGTGCCATACAGGAAAGTATAGTATAGTCACCTCTATAGAAGGGAAGACTGGGTCACACAGGTCAACAGGAGGTCAGGGGAGAACCTGCGGCCCTTCAGGATGGGAAACTGaccccagacagacagacagacagacagacaaacagacgcACCTCAACATTGGGCACTGCCAGCAGTGTAGCCCCAgactgaaagacagacagacacacacagctagGCAAGGGAACAAGTAGAGGCACACAGATGTAAACGGACACATGGACAGACTAAAGCCAATACACAGCTGTTTGATCTTATGGCATCAGGGGAAGTAGCTTTCGCAGATTTTGATCTCCTATattagacacacaaacagacaggcagACTGGACAAGGCACAGCAAAGACGATACTGACTTacagaaggaaagagagagagatagatagacctaccccctcccctctcctagTGAAGACTTACAGTGAAGCACAGCCTCATACTGTAGTGTTTATCCTTCGTTTGTGTGTAGTGttggacagacagacattcCCACCCCACTTTACTACTGAGGTCAGGGGTCACAGGAAATAGGGGAGgaggggtcaaaggtcaatcTCCCAAGAGTTCTTTCCTGCTCTCTCAATACCTGACTGCCATCACCTGCTGGCTGGGTGAAATATTATTTACTGACTTTTATATGAGAACATGACACTAGAAAGCGCAGACCAAGGGACCCCGGGGCCACTAACACAGGCATGCTGCTCCCCGGAAACCCGCATGGCATCTCTGGGTGCAGGAGCACAGCCTCAGCAGGCAGGGCTCCGCCCGGGTCCCACAGCGAGAGCAAAAAATGCCAATGCTTTGTATTATACTGCACTCCCCTGCCTAACActcccacactgcactgtataatACTGCACAGCACTACAGCGCACTGTGGGCCACTACACTGctctgtattgcactgtataaCACTGGACTGCAATGCACTGCTGATCAATTAATAATACGGCCTGCTGTACGGCACTGCACTGAACCATGACACATTGCATTGGTTGTACTGTGGTGTAGTGTACGTATTATATTGTAGTGTACAGATATGTATTTTAGTGTACAGTACTCGACAggactataatatatataggtTTCCTGCAGCCCTGTGTGGCCCAGGCTGTCTGCTGCTGTGTCCTGGGCCCTAAAACTACACCACCTGGCCTCCCAGCTGACTGTcagcgggaggaggaggagaatgaGGGGTTAATATGAGTTTAATTAGGTAATTATCTTTAGTAATTAAAAGTGCAGTGACACAGCTGCGCAGTCACAGTGGCTCTGAGTGGTTAATACAACTCCCAACTGGAGATTGAACAGAATAGAAACAGCACTAGAACATCCCCCCTAGGGCAGAGCTGCCAAGGTGACAGTGGCCACCAGCAGGTGGCACTGCCCTGGGGAGAAACCCCCACCAAGAGAATATCTCATCGATTTAtgcaattcattatttatgtgtgtatgtgtttatacaAAAGTCATCGTGTCTTTCTAAGGAAACCCCAGAGGAGGCATCCTGGAGCATGTCAGGAGCAACACCCGACATCGTGaggaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcagtgttggTGTGTAACAGCGTGTCTCTCAGTGAACTTGTAGGTTTGcacatgtgagtgtgtgtgtgtgtgtgtgtgtgtgagacagagtgTAGACATGTGTGGGTGCACGCGTGTTTGAGTGTGCGAGAGTTCGtaagagattgtgtgtgtgtatgagtgaatGAGTTcgagtgttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgagagtgtgtcagagattgtgtgtgtgtaagatgGCTCCCCATGCAGGGCAGCTGCAATCATTTTCTTGATCAGAACAGGAATGTAAAAAAACTCATTTCCCTTCCTTTCc
>TU194561
AATGAAATGGATCGCTGCAGGGCTGAGCACATGCAGTGACCAACACTGGCCACAGTCAGGCACTGTCCCCTCTGATAGGTCAGTCCCAgatctgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccctgtgAAGCTCTACTGGAGACAGTGCTGCCGGGTTCGAGTCTGATCAgctctcctttctttcttacAAGTAATAACGGATGTTGTGTGTGGTGGTTATAGGGTCATGAGGGTGGGGCTGTGTTACTGCACCCCCTGACCCCAGCACAAGACCCAGTCTCATtcagagctcaggtggaattaACACCAGGAaccctgtactgtactggactgtagcACTCCAGAACCAGGGCTGTACTGGACTGGGTCAGGGTTGTCCAGAGGTTACAGGGCTCTATAACATCAACATTCAGCTAAAAAATATCACCTTCCTCCTCcagtttaaacacaaacacatcccaGTCACACCCAGTCCAGTACAGCTCTTGCCCAAGTCCAGTTCTGTGCCATACAGGAAAGTATAGTATAGTCACCTCTATAGAAGGGAAGACTGGGTCACACAGGTCAACAGGAGGTCAGGGGAGAACCTGCGGCCCTTCAGGATGGGAAACTGaccccagacagacagacagacagacagacaaacagacgcACCTCAACATTGGGCACTGCCAGCAGTGTAGCCCCAgactgaaagacagacagacacacacagctagGCAAGGGAACAAGTAGAGGCACACAGATGTAAACGGACACATGGACAGACTAAAGCCAATACACAGCTGTTTGATCTTATGGCATCAGGGGAAGTAGCTTTCGCAGATTTTGATCTCCTATattagacacacaaacagacaggcagACTGGACAAGGCACAGCAAAGACGATACTGACTTacagaaggaaagagagagagatagatagacctaccccctcccctctcctagTGAAGACTTACAGTGAAGCACAGCCTCATACTGTAGTGTTTATCCTTCGTTTGTGTGTAGTGttggacagacagacattcCCACCCCACTTTACTACTGAGGTCAGGGGTCACAGGAAATAGGGGAGgaggggtcaaaggtcaatcTCCCAAGAGTTCTTTCCTGCTCTCTCAATACCTGACTGCCATCACCTGCTGGCTGGGTGAAATATTATTTACTGACTTTTATATGAGAACATGACACTAGAAAGCGCAGACCAAGGGACCCCGGGGCCACTAACACAGGCATGCTGCTCCCCGGAAACCCGCATGGCATCTCTGGGTGCAGGAGCACAGCCTCAGCAGGCAGGGCTCCGCCCGGGTCCCACAGCGAGAGCAAAAAATGCCAATGCTTTGTATTATACTGCACTCCCCTGCCTAACActcccacactgcactgtataatACTGCACAGCACTACAGCGCACTGTGGGCCACTACACTGctctgtattgcactgtataaCACTGGACTGCAATGCACTGCTGATCAATTAATAATACGGCCTGCTGTACGGCACTGCACTGAACCATGACACATTGCATTGGTTGTACTGTGGTGTAGTGTACGTATTATATTGTAGTGTACAGATATGTATTTTAGTGTACAGTACTCGACAggactataatatatataggtTTCCTGCAGCCCTGTGTGGCCCAGGCTGTCTGCTGCTGTGTCCTGGGCCCTAAAACTACACCACCTGGCCTCCCAGCTGACTGTcagcgggaggaggaggagaatgaGGGGTTAATATGAGTTTAATTAGGTAATTATCTTTAGTAATTAAAAGTGCAGTGACACAGCTGCGCAGTCACAGTGGCTCTGAGTGGTTAATACAACTCCCAACTGGAGATTGAACAGAATAGAAACAGCACTAGAACATCCCCCCTAGGGCAGAGCTGCCAAGGTGACAGTGGCCACCAGCAGGTGGCACTGCCCTGGGGAGAAACCCCCACCAAGAGAATATCTCATCGATTTAtgcaattcattatttatgtgtgtatgtgtttatacaAAAGTCATCGTGTCTTTCTAAGGAAACCCCAGAGGAGGCATCCTGGAGCATGTCAGGAGCAACACCCGACATCGTGaggaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcagtgttggTGTGTAACAGCGTGTCTCTCAGTGAACTTGTAGGTTTGcacatgtgagtgtgtgtgtgtgtgtgtgtgtgtgagacagagtgTAGACATGTGTGGGTGCACGCGTGTTTGAGTGTGCGAGAGTTCGtaagagattgtgtgtgtgtatgagtgaatGAGTTcgagtgttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgagagtgtgtcagagattgtgtgtgtgtaagatgGCTCCCCATGCAGGGCAGCTGCAATCATTTTCTTGATCAGAACAGGAATGTAAAAAAACTCATTTCCCTTCCTTTCc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194560 False 2384 lncRNA 0.49 2 10419906 10489854
TU194561 True 2483 lncRNA 0.49 2 10441067 10489854

Neighbor

gene id symbol gene type direction distance location
AMCG00005820 NA coding upstream 3769 10412525 ~ 10416137 (+)
AMCG00005927 NA coding upstream 158441 10260649 ~ 10261465 (+)
AMCG00005928 NA coding upstream 201581 10207320 ~ 10218325 (+)
AMCG00005934 NA coding upstream 283190 10132128 ~ 10136716 (+)
AMCG00005798 pitpnm3,LOC102785427 coding upstream 367097 10043818 ~ 10052809 (+)
AMCG00005858 NA coding downstream 12653 10502507 ~ 10502822 (+)
AMCG00005856 NA coding downstream 13724 10503578 ~ 10507292 (+)
AMCG00005857 NA coding downstream 31002 10520856 ~ 10523831 (+)
AMCG00005804 LOC106613805,LOC101170792,LOC103364385 coding downstream 126028 10615882 ~ 10623009 (+)
AMCG00005803 NA coding downstream 136595 10626449 ~ 10633432 (+)
G154447 NA non-coding upstream 87812 10285514 ~ 10332094 (+)
G154451 NA non-coding upstream 116409 10302957 ~ 10303497 (+)
G154388 NA non-coding upstream 340470 10078307 ~ 10079436 (+)
G154343 NA non-coding upstream 475763 9905772 ~ 9944143 (+)
G154252 NA non-coding upstream 978525 9440493 ~ 9441381 (+)
G154505 NA non-coding downstream 34113 10523967 ~ 10526052 (+)
G154574 NA non-coding downstream 86125 10575979 ~ 10576437 (+)
G154583 NA non-coding downstream 178144 10667998 ~ 10668261 (+)
G154722 NA non-coding downstream 507795 10997649 ~ 10999389 (+)
G154775 NA non-coding downstream 684541 11174395 ~ 11180237 (+)
AMCG00005929 NA other upstream 63662 10267273 ~ 10356244 (+)
AMCG00005851 NA other upstream 114997 10297889 ~ 10304909 (+)
AMCG00005802 NA other upstream 330137 10065160 ~ 10089769 (+)
G154330 NA other upstream 535951 9881382 ~ 9883955 (+)
G154283 NA other upstream 830108 9587802 ~ 9589798 (+)
G154499 NA other downstream 22650 10512504 ~ 10516390 (+)
AMCG00005835 LOC107586405 other downstream 190083 10679937 ~ 10714707 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other downstream 231898 10721752 ~ 10736626 (+)
G154636 LOC108435919,LOC108271001 other downstream 423543 10913397 ~ 10915729 (+)
AMCG00005840 LOC100304646,LOC107384145 other downstream 516944 11006798 ~ 11010354 (+)

Expression


Co-expression Network