G154499


Basic Information

Item Value
gene id G154499
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10512504 ~ 10516390 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU194591
CTGGATTGTCCACCTTTAGAGCAAACTTGATGTCAGTGTGGAGCTTCTGCAGCTTCTCCTCTGGAGACACCTctttctTCTTCTCCACTCTCCTCTCAGGTGGTCTCTCCACCTTCCTCTTCGGTTTGTCTGACTTGGGGGGCCTCCCACGCTGTTTCTCCTCTGATCTCTGGGGTTTCTTCTctttgctctccctctctctctccttcttgtCTTTCCCCTCATCCTTCCTCGGCCTCCCTTTCTTCTTGCCTTCTGGACGCTTGGGGAGTTTCTTCACCTCGGGAACGGGGGGCGAGTCGGAGTCAGAGTCAGAGGGGGCAGGGATTGGTGGCGGGGGCGGCTTCTTGCTCTTCTTGATTGGCTGGTCGTCCACACCCTCGTCggagctgctgttgctgccccctcccctgcctccgccaacctcctcctcctcctcctcctcctccccccctctctccttctccttcttccgctTCTCAtcctcttccttctctctctcccgcagCCTCCGCagctcctccgcctcctccctCCGTCtcttctcctccagctccttgCGTTTTTCCTCGTCTCTCCGCTTCCACTCACTGATTCGGTCCGGCTCACTGTCACTGCGGG

Function

GO: NA

KEGG:

id description
ko04137 Mitophagy - animal
ko04621 NOD-like receptor signaling pathway
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU194591 True 621 TUCP 0.59 4 10512504 10516390

Neighbor

gene id symbol gene type direction distance location
AMCG00005856 NA coding upstream 5212 10503578 ~ 10507292 (+)
AMCG00005858 NA coding upstream 9682 10502507 ~ 10502822 (+)
AMCG00005818 mpnd,LOC106591182,LOC107717566 coding upstream 25755 10480210 ~ 10486749 (+)
AMCG00005817 cactin,LOC106600017 coding upstream 76002 10431563 ~ 10436502 (+)
AMCG00005819 NA coding upstream 83538 10423109 ~ 10428966 (+)
AMCG00005857 NA coding downstream 4466 10520856 ~ 10523831 (+)
AMCG00005804 LOC106613805,LOC101170792,LOC103364385 coding downstream 99492 10615882 ~ 10623009 (+)
AMCG00005803 NA coding downstream 110059 10626449 ~ 10633432 (+)
AMCG00005837 NA coding downstream 180387 10696777 ~ 10697001 (+)
AMCG00005836 aes,chico,LOC103379965,LOC106574496,LOC107558286 coding downstream 184620 10701010 ~ 10712559 (+)
G154473 NA non-coding upstream 22650 10419906 ~ 10489854 (+)
G154447 NA non-coding upstream 180410 10285514 ~ 10332094 (+)
G154451 NA non-coding upstream 209007 10302957 ~ 10303497 (+)
G154388 NA non-coding upstream 433068 10078307 ~ 10079436 (+)
G154343 NA non-coding upstream 568361 9905772 ~ 9944143 (+)
G154505 NA non-coding downstream 7577 10523967 ~ 10526052 (+)
G154574 NA non-coding downstream 59589 10575979 ~ 10576437 (+)
G154583 NA non-coding downstream 151608 10667998 ~ 10668261 (+)
G154722 NA non-coding downstream 481259 10997649 ~ 10999389 (+)
G154775 NA non-coding downstream 658005 11174395 ~ 11180237 (+)
G154486 NA other upstream 40873 10470543 ~ 10471631 (+)
AMCG00005821 NA other upstream 43098 10462537 ~ 10469406 (+)
AMCG00005929 NA other upstream 156260 10267273 ~ 10356244 (+)
AMCG00005851 NA other upstream 207595 10297889 ~ 10304909 (+)
AMCG00005802 NA other upstream 422735 10065160 ~ 10089769 (+)
AMCG00005835 LOC107586405 other downstream 163547 10679937 ~ 10714707 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other downstream 205362 10721752 ~ 10736626 (+)
G154636 LOC108435919,LOC108271001 other downstream 397007 10913397 ~ 10915729 (+)
AMCG00005840 LOC100304646,LOC107384145 other downstream 490408 11006798 ~ 11010354 (+)
G154756 NA other downstream 566771 11083161 ~ 11086011 (+)

Expression


Co-expression Network