G154505


Basic Information

Item Value
gene id G154505
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10523967 ~ 10526052 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU194598
CTTGAATGGCAGAGCCTGAAGCCGGCTGCGATCATGCTGTTAAAACACTAAATGCCATTATGGGTCTCCTTTATATAAACGTCTCCCTTTCCATACCAGGACACACATGAAGGAGTAGAAGAGCCAAGTTTAAACTTGAATTCAACAGTAAGTCAACCAAAACACTTCAACAAttctaattaaactaaatgaacacGAACACACACCTCTGCTTTGTGATGTAACTGGTGCAGTAGTGAACACTTGGACCCCCGACCCAACAGACCTGTTCTGGGACCAGCCAGCCTCAATGCAACTAAAGCCaaggtcacactacacgaatcctagcccgatttggccctcccGCCAAGTGGCATGCTGTGTCGGAGCTCCCCAAGgcaaaggatttcagatcagtcgtgaAGTGTGTCCCCCTGTTCGTAAGCGATCATGTAGTGTTcgctccttcacgacgcaaaagacaAATTTAGTGAAAGCCAGTCTAAGTGTGAGTTGCCCTCTGTTCtcaaaatcgggtcggattgtagaaatcgtgtagtgtgaccctggCATAACTGGGGGAGCAAATGCCACCCAGGTTCAGCAGGAAAGATACAGTGACCACACAGATCTCCTGCTTAACTGGTCAGGTCACAGTcgccctcctcccctccctgcACCACAGACCCGAGGGAGACAGTAACTGGGCCTCAAGGAAGCACACAAACCAGAgattcatatacatacattatatatagtcaaagtatttatatttgctACATTGATCtattttattactgcactttaTTGCTCTTCTAGCATGTGAGGAAACTCCCACTGCACTCCTCCACAGTATTGTCTCCCGTCAGGAGTGTCTAACCACAGCCTGCTTTAATAGCTCCTGCCTGGACTGAGAGAACCCGCAGCCGGCCTCCCCCTGcaccccactcccactcccactgcCGCAGGGAAACTACTAGAGGGCTCTTGCatctaattaaactaaaaatatatatatggttcaTCTTATGACATAGATCTTTTTGCAAAATGAGTGTACATTTGTGTAGTTTTGGGAAAGAGGCTGGGAAAATGTAatagattttaattaacaaaattcttgcaaagcaaacaaaaccaaagcacCTCAGTGTTTAGACCCAGACATGATTGTAGAGAGATGGCAGGCTGCGGCCTGCTCTCAGAACCACACATCGCAGGCGCGGTATTAACCTACCTCCTCACACCCGAGCATCGTCACTGCAGTCCCATCCCACCAGGCGGGCCGggacagggctgcagtctgagcacCTGAGAGAGAGGCCCTGGCATGGGCCCGCCTGAACATAAACACGTGGAACTATTCTGTTTGCCATTATTAATTcaatcaacaacaaaatcatttcTGCCAATTACTGCTGTCCCTGGacatcactattattattattattatttttgtcatttagctgacgctcctCAGCCCCTCCCCTGCCAGTCCCACAGCCTGGGGCCCCTCTGCCCTGCTGGCTCCTGCTGTCACTACATGGTTGGCATCACTTGGTCTGATCAGAGCTGCTTTTTGCACCCCCCATTACTTTGAACAGCTGGGAGGTATCGATTTCAGTCCCTCAGAGCATGTGTAGCACCGCCACTCCAGCCATGCTGTGAGTGCAGAAGTACAACGGACAAATTAGTATTTCAATTAACACCCCAGTTCAGTAATGGGACAGTGTGTCTGCCTCCCCCGCATAGGAGCAGGACCACGAGCTAGAGAACTGGATGTTGTGTGGGGGGTGACTGTGGCTCCAGGCCCGTCTCCGATGGGGAGTCCCCTCTAAGGAACCACGCCTCGCGTCCAGACCGTCTGCACGGTCAGGGGAGATCCGAACCCCACCGCTCTGCATTCCCCTCATTAGTTccgttatcattattatttttatctgccTTGGTCTCTGTCTGCTGAATTGAGGGGACCGTTATAAACTGCTCATAACcctgtttcttgtttgtttctttgcttatgtacatgtaatatttatgttgttCGTCTCCCAACCAGCTGAAGTAATAAAAGTTATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194598 True 2059 lncRNA 0.48 2 10523967 10526052

Neighbor

gene id symbol gene type direction distance location
AMCG00005857 NA coding upstream 136 10520856 ~ 10523831 (+)
AMCG00005856 NA coding upstream 16675 10503578 ~ 10507292 (+)
AMCG00005858 NA coding upstream 21145 10502507 ~ 10502822 (+)
AMCG00005818 mpnd,LOC106591182,LOC107717566 coding upstream 37218 10480210 ~ 10486749 (+)
AMCG00005817 cactin,LOC106600017 coding upstream 87465 10431563 ~ 10436502 (+)
AMCG00005804 LOC106613805,LOC101170792,LOC103364385 coding downstream 89830 10615882 ~ 10623009 (+)
AMCG00005803 NA coding downstream 100397 10626449 ~ 10633432 (+)
AMCG00005837 NA coding downstream 170725 10696777 ~ 10697001 (+)
AMCG00005836 aes,chico,LOC103379965,LOC106574496,LOC107558286 coding downstream 174958 10701010 ~ 10712559 (+)
AMCG00005833 NA coding downstream 319484 10845536 ~ 10846858 (+)
G154473 NA non-coding upstream 34113 10419906 ~ 10489854 (+)
G154447 NA non-coding upstream 191873 10285514 ~ 10332094 (+)
G154451 NA non-coding upstream 220470 10302957 ~ 10303497 (+)
G154388 NA non-coding upstream 444531 10078307 ~ 10079436 (+)
G154343 NA non-coding upstream 579824 9905772 ~ 9944143 (+)
G154574 NA non-coding downstream 49927 10575979 ~ 10576437 (+)
G154583 NA non-coding downstream 141946 10667998 ~ 10668261 (+)
G154722 NA non-coding downstream 471597 10997649 ~ 10999389 (+)
G154775 NA non-coding downstream 648343 11174395 ~ 11180237 (+)
G154815 dot1l non-coding downstream 835953 11362005 ~ 11362233 (+)
G154499 NA other upstream 7577 10512504 ~ 10516390 (+)
G154486 NA other upstream 52336 10470543 ~ 10471631 (+)
AMCG00005821 NA other upstream 54561 10462537 ~ 10469406 (+)
AMCG00005929 NA other upstream 167723 10267273 ~ 10356244 (+)
AMCG00005851 NA other upstream 219058 10297889 ~ 10304909 (+)
AMCG00005835 LOC107586405 other downstream 153885 10679937 ~ 10714707 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other downstream 195700 10721752 ~ 10736626 (+)
G154636 LOC108435919,LOC108271001 other downstream 387345 10913397 ~ 10915729 (+)
AMCG00005840 LOC100304646,LOC107384145 other downstream 480746 11006798 ~ 11010354 (+)
G154756 NA other downstream 557109 11083161 ~ 11086011 (+)

Expression


Co-expression Network