G154642


Basic Information

Item Value
gene id G154642
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10690148 ~ 10693965 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU194763
atatttattttttttgtatttttttttgtatatatttttttttgtatttttgtatttttcatctttttaattattcttcttTTTTAGGAGAAGGCTATGAaaatcattttcatgttttaatgagGTCCAGGCAACAGTGgttgaaatgaaacaaatacaaaataaaaataaaattatatatacacatatagaagcatatgtatatatataaaatgtgtgtggctaaaaatactgtaaatcaaTAACCATTCAGACCCTCTGATGGGGTTTAGCAGTAACACCGTCTCCCTCCCCCCGTCCACACAAACAGTACATGCAATTAAATGACACAATCTCTTAAAAACAGCAGTTTTCTTCTTTAAtcttaaatacagaataaagttgtcctttttatttctttatttagtgttcatttgttttaaaaactggaCCCAGAAATACAGAGGTCCGCCTAATGATTCACAACGTTGGCACCTGAAAGGGGTTGAGCCACAGGGAGGGGGTTGGCACACGTATTATAGTACATCATTTACATTTGGTATActtagaaaacaacaaccaaaaaatacatGACTTGAAATTTGTACATCACTACACAATTTTTTAATCACcttgtgtttgtatatgtatatgtgtgtgtaatatatatatatatatatatatatatatatataaacaaataaaaaatatatattaagagaTTCTAAAAACAATAGTGTTTAGGTCATGTATcggcattcatttaaaaaaaacaaaaaaaaaaacaggaagaaaataaattaaaataaaaataaaataaaaagtaagttTAAATTACTCTACATCCGCTGCACTGTCATGGATGCCCAGCACAGCATCGCACCACCCGGCCCAGTACCTGTGATGTACAGCTGTGATCGGATGACCGGCGGATGAGTGAACCTAACTCGTGCTCTCCTGCAGGTTGAGCACGGACAGGGGGGGCACCAAGgagccgggggggggggcactggtTCTGCGCTGACTCATCTAATTTATCTGTAATATTTTGCTTTCCGCCGAGGAAGATAACACTCAAAACTCACACCCCACCGATGCCTCCgagtttacaaataaatacaaatgtatccCCACTGTCCGCCAGTGCTATCACAGTGCCACATGCACAAACCCTGCGTACACAGGTGTGGGGTTATATCCATTACCTGCACCATCTGTAAGTGCGGTGCGGCTTTGTCTCAGAGCGCAGCAGCCGGAGAGGCTGGCACCACACCTCCCAGTCCGCTGCCACTCACGCCTCCTGCGCTCATCGCTGACCCCCCATGCCCCCAGCGCCTCAGAGAGAAGTCAGACCGCTCCTCACCGGCCAAGAGACGGGCCGACGGAGCTGCTGTCCGCAAACCAGCACAAATAAGATCCTGAAACCCaatgcacagacacagccaTACGACTCAAAGACTCCAAGGGACTCCTTAACGaacagcagcagcctttatcaTTACAAACGCTTCTCCTCAATTAACAAACACTTGGAGCAGCACCCTGGTCTGCACTGAAGGACTCCGGCCCACCAATCGGCACGTGGCGCCGCGGCAGCGCTGCCACGCAGGAGAGACAAGGTGACACGGCGGGGTCAGCGCCGTTTGGGTTCTCATTTTAAGATGGCCAGCAGTGTCAGCCATAGATGTTAGATTTAGGTGTTGGAGGAGTGgggaaaacaaaccataaaaataaaaatggaccCTTTTCCtaattttttgtttggttctgtAGGTGTGGACACAGTGGGGGCCGCAGACCCCCAATGCCATGGAGTGTTTCGGAGCGCGAGGACGAGTTGAAGGCAGCTGCCTTCTCAGGGTCACAGGCCAGTTATTAGCAGCTGTTGAGCGATTCTGCGCCTGCTGGCTCAACCCAcaccacaaaaaacatttaatttctccAGAATTTAGTCTGTCGAACCCGTGTTCTCGGTCCGTCGTGGATCAGAAACATCCTTGCAGCTTTGTTTTTGCAACAGGCGGCAGCTCCCAGGAACTCTAAATGATCTGGTGGCACTACAGTAACCCCCCCAACCCCGTCCAGCTGTGACAAATCACTATAATACTTAATATCCCCATACTGATACAGTAGATCCAACAGTGCGACAGTGCAGAGGGCCCCGGCCGCCCAGCGTCTCCAGACGGGAGGATACTGCGGCTTTTCAAATACTTATCAGGTATTGGCACTAATTCAAGAGGCTCAACAAGAAGAGggaaacaccaccaccaccaccaccctgttcctcctctccctccgaGAACAGCAAAAGATGAGACTGGCGCCAGCAGCGGCCCCTCAGAGCCCCTGGTGCCCCTCTACCTCTGACCCAGCCTGGGCCAAGTAGTGTGCGGGCAGGACAGGACAGTGACCGGCGGGTACAGAGACGACGGCATGCAGATAGTCGTTGTTTGGGGCTTGTAGTTTGGGTTTTTAGCGGTGGGGGTAGCTCTGGGGGACTCGGCTCAGAAGAacatgcgctctctctctatcgctctctctctgttcacTCACAGGGCGAGAGGTGGTGTTCATGTGTTCGCTGTATTGGTACTGCTCCCCGCTGTGCTGGAGCAGGGGCTCTGTGCTGCGCCGCCGGGGCCCCCCTGTACACATGTCCGTGCTGAACCCGCACTCGAGCCGCGCCCCGCTCTCCATTTTTGCGTCGTCTGATgcaaacccccccaccccatctccGGTCCTCACTCCCAGCCCTgcaaaaatgcacattaaaacTCTCTCGCACTACACTATCTATAGAAGCCTGTAATAAATGTTAAGAGTTCATTAGCCCTTGTGATGAGAATGCGTGAAACTGACCCGACCGTACTGCagaaaccccccccaccccgcagCACGGCTCCGCAGCTTCTAGTGTCACTAAGCCAGGACAAGCCAAAGGACCACAACGAGAggtacaacaaaataaagaaaagcacgCACCAGACAATTTTCAACCACTGATCGCTCCTTAATATAGATTGTAGAATTTCCTATTTTTGCATAAAGCACTGCTCCTAAAAATTTTTAtaaagaattttttttttccatcattgAAGAAACCGAACCAAAGAAGAATCAAGTGATGCATAAAGTGTCTTGACGGCCACTTCAGTCGAACACGGCAGCAACCGAGTGAACCGGAGTGACAGCTCATTGCGTGCCTAAAACAATGCGCCTGCGTGCGTTTATGAATTTCTTACAGCAGAACAGACCTACTGTCCCCCCAGGGAGAGAGATGAGCGCAAAACTCATCAGGAAGGAAACAAAACgataaaaagggaagaaaaaaacaaaacgacatcTATAAAATCTGGTCcataaataagataaataaaactatttctttatttagtttctttttaaaatcactgTTAAATCGTCCTAAACCATGCCACccgatggaaaaaaaataaaaataaaaatgaagaaacagacGATCGACACACACAGCCCGTCCTCCTCACACACTAGATTACAGATTCCCCAAGAACTTTTTAACAAGTTACTCGGCACAAAAACAGAAGATGCACACTATTATTTATATCATGACCTCGCTCATTACCTCTATAACTGTAATCTGCAAACATAAGTACAGCAAGTAAATTGTATGAAACTTCAATAATGGATAGCCTGTGGCAGCCTCAGTGCTATGGTAATGCATGAGCAACCCGAAGGGGCAGGACAGCACATCAAAATGGAGAAAAAGATGGAGGCGAAgattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194763 True 3743 lncRNA 0.45 2 10690148 10693965

Neighbor

gene id symbol gene type direction distance location
AMCG00005805 NA coding downstream 24893 10659811 ~ 10665255 (-)
AMCG00005863 NA coding downstream 132393 10551424 ~ 10557755 (-)
AMCG00005859 NA coding downstream 150102 10526146 ~ 10540046 (-)
AMCG00005861 LOC108230546,LOC102305552,LOC100698652,LOC101481066,LOC102203928 coding downstream 170530 10508657 ~ 10519618 (-)
AMCG00005860 sh3gl1,LOC103358795,LOC102230617,LOC104918435 coding downstream 187466 10489878 ~ 10502682 (-)
AMCG00005838 plpp2,lpp2,LOC106584410 coding upstream 74826 10768791 ~ 10777146 (-)
AMCG00005828 NA coding upstream 94589 10788554 ~ 10806283 (-)
AMCG00005830 NA coding upstream 124905 10818870 ~ 10828071 (-)
AMCG00005829 NA coding upstream 136025 10829990 ~ 10837970 (-)
AMCG00005827 NA coding upstream 173498 10867463 ~ 10869932 (-)
G154575 NA non-coding downstream 113646 10575970 ~ 10576502 (-)
G154400 NA non-coding downstream 545217 10144483 ~ 10144931 (-)
G154399 NA non-coding downstream 551223 10137428 ~ 10138925 (-)
G154391 NA non-coding downstream 598532 10089554 ~ 10091616 (-)
G154280 NA non-coding downstream 1117240 9572215 ~ 9572908 (-)
G154675 NA non-coding upstream 108599 10802564 ~ 10818716 (-)
G154715 NA non-coding upstream 285593 10979558 ~ 10983480 (-)
G154723 NA non-coding upstream 303812 10997777 ~ 10999382 (-)
G154745 NA non-coding upstream 307709 11001674 ~ 11078201 (-)
G154782 NA non-coding upstream 513066 11207031 ~ 11208176 (-)
AMCG00005862 NA other downstream 138793 10543534 ~ 10551355 (-)
AMCG00005850 NA other downstream 337366 10295599 ~ 10352782 (-)
G154250 NA other downstream 1255208 9425290 ~ 9434940 (-)
G154142 NA other downstream 1597575 9090422 ~ 9092573 (-)
G153806 NA other downstream 2565463 8091748 ~ 8124685 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 44579 10738544 ~ 10752114 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other upstream 149876 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other upstream 155550 10849515 ~ 10865796 (-)
AMCG00005876 oaz1,oaz1s other upstream 626295 11320260 ~ 11325068 (-)
AMCG00005877 sf3a2 other upstream 642630 11336595 ~ 11339135 (-)

Expression


Co-expression Network