G154677 (ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634)


Basic Information

Item Value
gene id G154677
gene name ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10843841 ~ 10912745 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU194813
TCAAAATCGcacatccatttttattttactttattatcattatcttttttcagttttttttattttatttttttccataactTTAAAGActccattaattattttctgtagttAAGTCGATGGTCGCCGAATCCGGTCTGCGGTGTTTGCGTGCGGGGAGGTGCAGTGTGGTGCTCTGTACAGTCCCGACCCCCGTTCCGGGTTTAGGGAGGAGAGGAATGAGAAGGGTGCTTGGTTCCATTTTGGTAGTCCCTCCTGATTTCTCTACAGTTTGTCCAGGTAGTTGTCCAGGGCAGGGATACCCTCCTTCAGCCCCTTGCGCTTGCGGGTGTCGGTCACCACCTGGGCCGGCTTGGTGCTGGGGTCGCTGGGGTCTCCGGGCAGGATCTGCCAGTGGTCGAACACGCACTGCGGGAAGGCCTGGCCACCGGTGTTGGAGCGCAGGTCAGCAGTGAACCGAAGGACTCGTTGACGGGCAGGAAGGCCTTGACGATGAACATGGGTGTGCCAGTCACCTGGGACTCCTCGAACACGTGCCCTCGCTTCCTGTTCAGTACACCATAGATGCCACCCACCACCTGCTCCGGGCACTGCGATTGGACAAGACAGGAGTCAGTCAAAACTGTAGATTCCCCAGTTGTGGGGTTCAGAAGGAAGGCTCAAGATTGGCAGAGCGGTGCGGTCAGTGAACGGGCAGGGCAGACACTCACCTGGATCTCCACCAGGTAGACGGGCTCCATGAGGCGGGGCTCGGCAGTGAGCTGGCAGGCGTACAGCACGCGGCGTGCCGTGGGGATGATCTGGCCACCACCACGGTGGATGGCGTCCGTGTGCAGCGTCACATCGTGGATGTCAAAGCGAATGGCACGCATGTTCTCCTCGCACAGGGCACCCTGGGTAATCAGAGCAACATGCATCACACACAGGCCGAGTCCCAAGTGTAAATACTTCTATACCAGCCTACTCCTCTCCCTGCCGCTCTACTCACCTCCTTGGTCGCCCACTGGAAGCCAGCCACCACGCTATCCTTGATCTCGTTCAGGTACTGCACTCCCTTGGTCACGTCCACCAGCATGTTGGGCCCGGTACCATCAGGGCCAAAGCACCAGATCTTACGGGCCTCGGTCACGTCCCACTCGTACTTGTCAGCCAGGTAGCGAGCACGGGCCTTGAGCTCCTGTCGGGAGGAGACGTCGCCCTTCTCGATGTCCTCGGCCAGGCCGTCGGGGAAGGGGCGGGCGCGCATGTACAGGCGGTTGTGCTTGTTGGGGGACTTGGACAGGCACATCTGGTTGGACTCCTCACTCACCGTCTCCCTGTAGGACACCACCGGGTCAGATTCTTCAGTGGGATGCAGGCGTGGTCCTCCTCCAGATCCTTCAGGCAGATCTCCAGATGCAGCTCTCCAGCACCGGCAATGATGTGCTCACCAGACTCCTCAATGATGCACTGCACCATGGGGTCAGACTTAGCCAGACGCTTCAGACCCTCCACCAGCTTGGGCAGATCGGCGGGGTTCTTGGCTTCCACCGCCACACGTACCACGGGGCTCACACTGAACTTCATGACACGCATGTTGTGCGCCTGCTCGTAGGTGGTGATGGTGCCGGTCTTCACCAGGTATTGGTCCACTCCCACCAGCCCCACGATGTTTCCGCAGGGCACATCCTCGATGGGCTCCACATAGCGCCCCATCATCAGGATGGTCCTGAATGGGTTTGAGGTAGAGGTCCTCCTTCTTGCCGGGGGTGTAGTTTGGTCCCATGATGCGCACCTTGAGGCCGGTGGACACACAGCCAGAGAAGACGCGTCCGAAGGCATAGAAGCGGCCCTTATCCGTGGTTGGCACCATCTTGGAGATGTACATCATCAAGGGGGCCTTGGGGTCACAGTTCTTAATACCTGAGGGGGGAG
>TU194815
TCAAAATCGcacatccatttttattttactttattatcattatcttttttcagttttttttattttatttttttccataactTTAAAGActccattaattattttctgtagttAAGTCGATGGTCGCCGAATCCGGTCTGCGGTGTTTGCGTGCGGGGAGGTGCAGTGTGGTGCTCTGTACAGTCCCGACCCCCGTTCCGGGTTTAGGGAGGAGAGGAATGAGAAGGGTGCTTGGTTCCATTTTGGTAGTCCCTCCTGATTTCTCTACAGTTTGTCCAGGTAGTTGTCCAGGGCAGGGATACCCTCCTTCAGCCCCTTGCGCTTGCGGGTGTCGGTCACCACCTGGGCCGGCTTGGTGCTGGGGTCGCTGGGGTCTCCGGGCAGGATCTGCCAGTGGTCGAACACGCACTGCGGGAAGGCCTGGCCACCGGTGTTGGAGCGCAGGTCAGCAGTGAAGCCTGGAGGGacaggggagaggagaggacagtCAGACAGGAGGTCCAGAGGGAATGTATGCAAGTGTACAGTATTTTGCCAGTGTATCGTAGAGTTTCGGTGTGGGTGCAGGCGTCTCACTCACCGAAGGACTCGTTGACGGGCAGGAAGGCCTTGACGATGAACATGGGTGTGCCAGTCACCTGGGACTCCTCGAACACGTGCCCTCGCTTCCTGTTCAGTACACCATAGATGCCACCCACCACCTGCTCCGGGCACTGCGATTGGACAAGACAGGAGTCAGTCAAAACTGTAGATTCCCCAGTTGTGGGGTTCAGAAGGAAGGCTCAAGATTGGCAGAGCGGTGCGGTCAGTGAACGGGCAGGGCAGACACTCACCTGGATCTCCACCAGGTAGACGGGCTCCATGAGGCGGGGCTCGGCAGTGAGCTGGCAGGCGTACAGCACGCGGCGTGCCGTGGGGATGATCTGGCCACCACCACGGTGGATGGCGTCCGTGTGCAGCGTCACATCGTGGATGTCAAAGCGAATGGCACGCATGTTCTCCTCGCACAGGGCACCCTGGGTAATCAGAGCAACATGCATCACACACAGGCCGAGTCCCAAGTGTAAATACTTCTATACCAGCCTACTCCTCTCCCTGCCGCTCTACTCACCTCCTTGGTCGCCCACTGGAAGCCAGCCACCACGCTATCCTTGATCTCGTTCAGGTACTGCACTCCCTTGGTCACGTCCACCAGCATGTTGGGCCCGGTACCATCAGGGCCAAAGCACCAGATCTTACGGGCCTCGGTCACGTCCCACTCGTACTTGTCAGCCAGGTAGCGAGCACGGGCCTTGAGCTCCTGTCGGGAGGAGACGTCGCCCTTCTCGATGTCCTCGGCCAGGCCGTCGGGGAAGGGGCGGGCGCGCATGTACAGGCGGTTGTGCTTGTTGGGGGACTTGGACAGGCACATCTGGTTGGACTCCTCACTCACCGTCTCCCTGTAGGACACCACCGGGTCAGATTCTTCAGTGGGATGCAGGCGTGGTCCTCCTCCAGATCCTTCAGGCAGATCTCCAGATGCAGCTCTCCAGCACCGGCAATGATGTGCTCACCAGACTCCTCAATGATGCACTGCACCATGGGGTCAGACTTAGCCAGACGCTTCAGACCCTCCACCAGCTTGGGCAGATCGGCGGGGTTCTTGGCTTCCACCGCCACACGTACCACGGGGCTCACACTGAACTTCATGACACGCATGTTGTGCGCCTGCTCGTAGGTGGTGATGGTGCCGGTCTTCACCAGGTATTGGTCCACTCCCACCAGCCCCACGATGTTTCCGCAGGGCACATCCTCGATGGGCTCCACATAGCGCCCCATCATCAGGATGGTCCTGAGGGGGAGAGGGGTTTAAGTTAAACAGAAGACAGTAGTggaaagggaggaggaggaagaggaagacgaGAGTGCATGGGCTGGGACTGACCTCTGAATGGGTTTGAGGTAGAGGTCCTCCTTCTTGCCGGGGGTGTAGTTTGGTCCCATGATGCGCACCTTGAGGCCGGTGGACACACAGCCAGAGAAGACGCGTCCGAAGGCATAGAAGCGGCCCTTATCCGTGGTTGGCACCATCTTGGAGATGTACATCATCAAGGGGGCCTTGGGGTCACAGTTCTTAATACCTGAGGGGGGAG
>TU194821
CAACCAGGACCCCCGACTCACCCATGGCGGCATCATCATCTCCGGGTCCCTCGTACAGCAGCTCGCAGCGGTACCTCTGGGCGGTGACGGGCGAGGGCAGGTGGATGGTGATCATCTGAAGCAGGGCCTCACCGGCGGGCAGCCAGCGGCGCATCACCGCCTTCAGCAGAGGCTTGCCCTCCTTCTCCTTGTCCTCCACGTCCAGCTTGATGTCCAGCTTCTCGATCAGCTTGGCAGTCTCGTCCTTCTTGAAATTCATGATGGCGTCGAACACCTGAAGATGGGGTCCAGGATGAGCTGGGCAAAGGTACGTGGCAGCTTCTTGCCATCTGGGGTGTTGGCAGACTTGCTGAACTTGCCGTTGGAGGGGTCAAAAAAACCTGTCTCCCCACAGCTTCTTCATCATCTCCTCCACCTTCCTGGCCCTCTCAGATGGTCCCAGCTGCGCGTCACCCTTGGCAGCGAACTTGGCAACATACATCTCGGCAAACTGCTTCAGGGTGAAGGCCCAGCCGTGCAGACCTGAGCCAAACCCCACAGTACCGATCACTGGGTCAATCATGACGTTGACGTTCTCCACAATGCGCTGGAAGGTCTGGTACAACTCCTCAGGCTCTAGCTGCAGCTCCAGCAGGGCACGGTCCATCTTGTTCATCATCAGCACCGGCTTGATGCGCTCGGCGATGGCCTGACGCAGCACGGTCTCAGTCTGCACACACACGCCAGACACGCAGTCCACCACCACCAGAGCGCCGTCCGTCACACGGAGCGCGGCAGTCACCTCCGAGGAGAAGTCCACGTGGCCGGGGGAGTCTATCAGGTTGATGAGGAAGCCGAAGCCATCCTTGCACTGCTTGATGAAGGCCATGTCGTTCTCGCACAGCTCATAGTACATGGAGATGGCAGACTTGATGGTGATGCAGCGCTCCTGCTCATCCTTGCGGGTGTCGGTGAAGCGGGTCTCTCCGGCGCGGGACGAGGCAATGATGCCAGCCTTGGACACCAACGAGTCGGTCAGCGTGGATTTGCCGTGGTCGACGTGCGCAATCACAGACATGTTACGGATGTTGGACTTTTTGTCCATGATGGCACGGATCTGGTCCACTGTGAAGTTCACATTTTGGCGGATGGTTGTGGATTCTCGTTGCAGGAAAAAGGGGGCGCTTGAGAGAGCGATTTACACTGCCTACCACGCTTGCGGAGAGGCAGGGAAGAGAGAGCTGACGTCAACAAGC
>TU194822
TCAAAATCGcacatccatttttattttactttattatcattatcttttttcagttttttttattttatttttttccataactTTAAAGActccattaattattttctgtagttAAGTCGATGGTCGCCGAATCCGGTCTGCGGTGTTTGCGTGCGGGGAGGTGCAGTGTGGTGCTCTGTACAGTCCCGACCCCCGTTCCGGGTTTAGGGAGGAGAGGAATGAGAAGGGTGCTTGGTTCCATTTTGGTAGTCCCTCCTGATTTCTCTACAGTTTGTCCAGGTAGTTGTCCAGGGCAGGGATACCCTCCTTCAGCCCCTTGCGCTTGCGGGTGTCGGTCACCACCTGGGCCGGCTTGGTGCTGGGGTCGCTGGGGTCTCCGGGCAGGATCTGCCAGTGGTCGAACACGCACTGCGGGAAGGCCTGGCCACCGGTGTTGGAGCGCAGGTCAGCAGTGAAGCCTGGAGGGacaggggagaggagaggacagtCAGACAGGAGGTCCAGAGGGAATGTATGCAAGTGTACAGTATTTTGCCAGTGTATCGTAGAGTTTCGGTGTGGGTGCAGGCGTCTCACTCACCGAAGGACTCGTTGACGGGCAGGAAGGCCTTGACGATGAACATGGGTGTGCCAGTCACCTGGGACTCCTCGAACACGTGCCCTCGCTTCCTGTTCAGTACACCATAGATGCCACCCACCACCTGCTCCGGGCACTGCGCTTGCGGGTGTCGGTGAAGCGGGTCTCTCCGGCGCGGGACGAGGCAATGATGCCAGCCTTGGACACCAACGAGTCGGTCAGCGTGGATTTGCCGTGGTCGACGTGCGCAATCACAGACATGTTACGGATGTTGGACTTTTTGCCGGGTCTCTCC

Function

symbol description
eef2 Enables protein kinase binding activity and ribosome binding activity. Involved in positive regulation of translation. Located in aggresome; cytosol; and plasma membrane. Part of ribonucleoprotein complex. Implicated in glaucoma and spinocerebellar ataxia type 26. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: elongation factor 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194813 False 1914 lncRNA 0.58 4 10910516 10912745
TU194815 True 2132 TUCP 0.57 2 10910516 10912745
TU194821 False 1235 TUCP 0.59 6 10906295 10910432
TU194822 False 872 TUCP 0.55 3 10843841 10912745

Neighbor

gene id symbol gene type direction distance location
AMCG00005829 NA coding downstream 5871 10829990 ~ 10837970 (-)
AMCG00005830 NA coding downstream 15770 10818870 ~ 10828071 (-)
AMCG00005828 NA coding downstream 37558 10788554 ~ 10806283 (-)
AMCG00005838 plpp2,lpp2,LOC106584410 coding downstream 66695 10768791 ~ 10777146 (-)
AMCG00005805 NA coding downstream 178586 10659811 ~ 10665255 (-)
AMCG00005870 btbd2,LOC108435919,LOC108427161,LOC103376164 coding upstream 590 10913335 ~ 10917815 (-)
AMCG00005844 NA coding upstream 53683 10966428 ~ 10974812 (-)
AMCG00005847 NA coding upstream 62661 10975406 ~ 10976142 (-)
AMCG00005846 LOC108230728,LOC100701936,LOC102800276,LOC102208033,LOC101482435,LOC106613769,LOC104940954 coding upstream 63497 10976242 ~ 10982438 (-)
AMCG00005841 NA coding upstream 69840 10982585 ~ 10986224 (-)
G154675 NA non-coding downstream 25125 10802564 ~ 10818716 (-)
G154642 NA non-coding downstream 149876 10690148 ~ 10693965 (-)
G154575 NA non-coding downstream 267339 10575970 ~ 10576502 (-)
G154400 NA non-coding downstream 698910 10144483 ~ 10144931 (-)
G154399 NA non-coding downstream 704916 10137428 ~ 10138925 (-)
G154715 NA non-coding upstream 66813 10979558 ~ 10983480 (-)
G154723 NA non-coding upstream 85032 10997777 ~ 10999382 (-)
G154745 NA non-coding upstream 88929 11001674 ~ 11078201 (-)
G154782 NA non-coding upstream 294286 11207031 ~ 11208176 (-)
G154791 NA non-coding upstream 371383 11284128 ~ 11284398 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other downstream 91727 10738544 ~ 10752114 (-)
AMCG00005862 NA other downstream 292486 10543534 ~ 10551355 (-)
AMCG00005850 NA other downstream 491059 10295599 ~ 10352782 (-)
G154250 NA other downstream 1408901 9425290 ~ 9434940 (-)
G154142 NA other downstream 1751268 9090422 ~ 9092573 (-)
AMCG00005876 oaz1,oaz1s other upstream 407515 11320260 ~ 11325068 (-)
AMCG00005877 sf3a2 other upstream 423850 11336595 ~ 11339135 (-)
AMCG00005879 dot1l,LOC106920479 other upstream 436500 11349245 ~ 11360874 (-)
AMCG00005875 NA other upstream 461730 11374475 ~ 11376538 (-)
AMCG00005989 NA other upstream 1756511 12669256 ~ 12675994 (-)

Expression


Co-expression Network