G154722


Basic Information

Item Value
gene id G154722
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10997649 ~ 10999389 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU194890
CTCACAGTGGAGAAAAGGACTGGgagtggggttggggggtgaaACAATCTAATAAATACACACCAGACGAGCCCAGAGATACAGGTATAGTTTGAAAATTTTAATattcacataaataaaacaacccccccaaaataCAGCACGTAGAAAACAAaGCCATTTCCACAGCTACTCGTCCTTCTTGAACTTGCCATTGATGTAGGGCACATAGCCCATGATCACCTGCCAGTCCGTGGCGAAGAGCAGCGTCACTGTGCCCACCGAGCCCCAGCCGGCCAGGGTGGGAGCCCtgcggagagggagagggagagagagagagagagagaggtgtcaCGCAGGCCAGATGCCTCTTCTCAGGGCAACATGAAAGGCACACAGCTCTGCTTGTGCTCTGCCCATCGAACCCAGGGCCTGCCAGTCCGCTCCGGTGCACGATGCTGTTGCAGTAGGGCAGGACTGGAGGCTGGCAGGGTCGCTGCTCTGGCACTGTGACAATCTTCAACTGTCCATCAACGCAAGAGCACACAGGACTGTCACATGAGTCATAacgaacatacatacacaaaaacacacacacacacacacaccagctgtGGGTGCAGTCAACATCTCTGCACAATCCAACACCGCAATTTTCTCGACACAAACCCCCAGCAGGAACACAGGACACACCTCATCCCCTCCACAGCGCCAGGACAGAAGAATAAACTGATCTAAAGAACAAGTCTGTGGAAACGCCTAGAATAGGTTACATAATTGCGGGGattgttactgtactgtagttatTGACTCAAAAGGACTCATTGAAAACGCATTGGCTGGTGTGGTACCAGCAGACCCAGGCCACCGTACCGTTCAAAGGGCACCTGGACGACTTATACAGCGACTGCGAAGGTCGTAGTCGATACCTACGGTTTAAATACCAATCCGAAACCACCCATTATCGTAAGCCCACTGTCCGGTGATCTTTCTACGGCGGATCCGAGTCACCCGGTGCTACTGGAGCGGAGTGTCCGAGGACAGAGCGACACCGGGGACAGCAGCGGCCTCATTATAGGACACACAGATATTCAGCCTGACCCGGTTCCGCAGTTTACCGCTCGTCTCACGCTGCACGACCGGCCGGCCCAGTCGCTTCTTACCAGGACTTGGCGATCTGCACGTATCTCGGCCCGATCAGTTTGGTGAGCATCTTACTTGTCCTGACCTTCCGCTGACCAGCGAAGCAGATTTAAATGGCGGATTGAGGACCATCGGCCTCACTAGCGCCTGTGTGGAAGTAGTGTAATTGTCtaatctttaaaaatagatttatt

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
TU194890 True 1316 lncRNA 0.52 2 10997649 10999389

Neighbor

gene id symbol gene type direction distance location
AMCG00005869 unc13a coding upstream 34962 10929794 ~ 10962687 (+)
AMCG00005868 NA coding upstream 74102 10919948 ~ 10923547 (+)
AMCG00005867 eef2b,ef2,LOC106613766,LOC107552698 coding upstream 84977 10906357 ~ 10912672 (+)
AMCG00005826 sirt6,LOC107667852 coding upstream 111402 10882619 ~ 10886247 (+)
AMCG00005833 NA coding upstream 150791 10845536 ~ 10846858 (+)
AMCG00005813 NA coding downstream 93442 11092831 ~ 11097368 (+)
AMCG00005812 NA coding downstream 99020 11098409 ~ 11103223 (+)
AMCG00005815 LOC105011560,LOC106515027,LOC106613776,LOC103149819,LOC103463645 coding downstream 140409 11139798 ~ 11140832 (+)
AMCG00005816 LOC106613776,LOC100708007,LOC103354199,LOC102796955 coding downstream 171625 11171014 ~ 11172074 (+)
AMCG00005854 LOC108270825,LOC105011562,LOC103046807,LOC108438768,LOC102210929,LOC108247476,LOC101470054,LOC105929969 coding downstream 205998 11205387 ~ 11206589 (+)
G154583 NA non-coding upstream 329388 10667998 ~ 10668261 (+)
G154574 NA non-coding upstream 421212 10575979 ~ 10576437 (+)
G154505 NA non-coding upstream 471597 10523967 ~ 10526052 (+)
G154473 NA non-coding upstream 507795 10419906 ~ 10489854 (+)
G154447 NA non-coding upstream 665555 10285514 ~ 10332094 (+)
G154775 NA non-coding downstream 175006 11174395 ~ 11180237 (+)
G154815 dot1l non-coding downstream 362616 11362005 ~ 11362233 (+)
G154816 NA non-coding downstream 371035 11370424 ~ 11370912 (+)
G154831 NA non-coding downstream 379391 11378780 ~ 11379289 (+)
G154847 NA non-coding downstream 416676 11416065 ~ 11416329 (+)
G154636 LOC108435919,LOC108271001 other upstream 81920 10913397 ~ 10915729 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other upstream 261023 10721752 ~ 10736626 (+)
AMCG00005835 LOC107586405 other upstream 282942 10679937 ~ 10714707 (+)
G154499 NA other upstream 481259 10512504 ~ 10516390 (+)
G154486 NA other upstream 526018 10470543 ~ 10471631 (+)
AMCG00005840 LOC100304646,LOC107384145 other downstream 7409 11006798 ~ 11010354 (+)
G154756 NA other downstream 83772 11083161 ~ 11086011 (+)
G154798 NA other downstream 320575 11319964 ~ 11361770 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other downstream 406917 11406306 ~ 11409672 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other downstream 602513 11601902 ~ 11610151 (+)

Expression


Co-expression Network