G154782


Basic Information

Item Value
gene id G154782
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11207031 ~ 11208176 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU194964
TTACAACTagaataaaactttatttaatttgccaaAAACATATGTAAAGAGCTTAAagctttgttaaaaataaacgaGCTGAAAACGAGAAAGGAAACAAGCTGGAGTTGAGCCCTGATGTTGCAGTTTCAGCCCAGTTGTGTCTGAGTGAGTTCAGCGGGGCGCAGTGCGGTGGCACGGCAGGGCGCAGGCATTGCCCACTGCATGTGCCCGGGTCCGCGACGCGCTGCGGCTGCGCAGGGGAGCTGTGCCTCTGTCACAATTAATGGTTTCAAACCGCGTCAACACGTGACTGAAAttgtcaaatgtcaaatgtgtGCTTGAATAAGAGACACACCACTATCCAAGATCGTGTCGATCATATAAACAACtgtgaaaatgtcacatttaaatCATGGCAGATGGCACGtcgtgtcataacttcctggaaaAATCTGTCTTCCTAGACCAGATCTGTCTTCCCCACTGCAGCTGTTGTCCATTAGACATATTTCCGTCACTTGATCGTGCCGCTCGACTAACATACGTGTAACATGAATAAATCAACGTGTACCTGGGTCGTTTATCCTTGTGTGGCTTCCTTTTGTTTATCTGCTGAAGTGAATGCATTTCTACTCATTTCAGTTTGGATGAAATGTAACAAGGAATAATGTCtacaagcaataataattatggtCATGATTGGGATAACCTTATTATTGCTAAACACTAAACAAACTGCTTACTGaagattgtactggaataagaaagttacTGTATACCTGGCGaacatacacacaataacacacatcaGTAAATTCATATACACCAGCATAAGTGAGCGGCACGATCAAGTGATGGAAATATTGCCCTGTAATTTGATCATAGGTGTTGTGGAGAGGACAGTAGTTTGTatgctatccaggaagttaagACACAATGCAGTTTGACATGCACCACTACTGTGTGTTAAAATTTGACCTTTTTAACAGTTGCTTACTGGAGTCACTCGAACTGGAAGAGTGTTTTGTATCTTAATCATCCAACATAACAACACATACAGATGCGTAAAACTGTGAATTCCACTTAAGTATCAGCCTTGCAGTCATTAGGTTTTGGTTTTTGTTGGTGTCTGTCAACAAGCGTGACTTGGCTTGGGCCTCCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194964 True 1146 lncRNA 0.42 1 11207031 11208176

Neighbor

gene id symbol gene type direction distance location
AMCG00005852 NA coding downstream 16726 11180934 ~ 11190305 (-)
AMCG00005814 map2k2 coding downstream 113489 11082498 ~ 11093542 (-)
AMCG00005845 NA coding downstream 129417 11064028 ~ 11077614 (-)
AMCG00005843 NA coding downstream 175947 11013677 ~ 11031084 (-)
AMCG00005842 mbd3,LOC106613771,LOC105011554,LOC108430109,LOC101480296,LOC103354193,LOC104920733 coding downstream 212710 10988152 ~ 10994321 (-)
AMCG00005855 LOC108427150,LOC107696585,LOC108280165,LOC107552683,LOC107724989,LOC107549819,LOC100151059 coding upstream 54898 11263074 ~ 11266410 (-)
AMCG00005878 NA coding upstream 91436 11299612 ~ 11306670 (-)
AMCG00005882 NA coding upstream 123596 11331772 ~ 11334954 (-)
AMCG00005880 dot1l,LOC107593341,LOC107729667 coding upstream 152981 11361157 ~ 11367917 (-)
AMCG00005881 NA coding upstream 162084 11370260 ~ 11372316 (-)
G154745 NA non-coding downstream 128830 11001674 ~ 11078201 (-)
G154723 NA non-coding downstream 207649 10997777 ~ 10999382 (-)
G154715 NA non-coding downstream 223551 10979558 ~ 10983480 (-)
G154675 NA non-coding downstream 388315 10802564 ~ 10818716 (-)
G154642 NA non-coding downstream 513066 10690148 ~ 10693965 (-)
G154791 NA non-coding upstream 75952 11284128 ~ 11284398 (-)
G154817 NA non-coding upstream 101522 11309698 ~ 11319984 (-)
G154848 NA non-coding upstream 207641 11415817 ~ 11416388 (-)
G154906 NA non-coding upstream 361097 11569273 ~ 11613611 (-)
G154909 NA non-coding upstream 405498 11613674 ~ 11614383 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other downstream 294286 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 341235 10849515 ~ 10865796 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other downstream 454917 10738544 ~ 10752114 (-)
AMCG00005862 NA other downstream 655676 10543534 ~ 10551355 (-)
AMCG00005850 NA other downstream 854249 10295599 ~ 10352782 (-)
AMCG00005876 oaz1,oaz1s other upstream 112084 11320260 ~ 11325068 (-)
AMCG00005877 sf3a2 other upstream 128419 11336595 ~ 11339135 (-)
AMCG00005879 dot1l,LOC106920479 other upstream 141069 11349245 ~ 11360874 (-)
AMCG00005875 NA other upstream 166299 11374475 ~ 11376538 (-)
AMCG00005989 NA other upstream 1461080 12669256 ~ 12675994 (-)

Expression


Co-expression Network