G154879


Basic Information

Item Value
gene id G154879
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11486492 ~ 11488514 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU195080
AAAGGGACAAAAACAGGCACCATTCGCCTGCATTCTCCTCGTCACATCATTTTATTTGGGGATTTGGATTAAAGCGGTTTTCCAAAATGGATGCCTGGTGGGGGGGCAATTAAAGAGGCAGATGAGCTTGCACAAGAACACTTCCTTtaggttcacacacacacacacacacacacacacacacacacacacacacaaacacacaaacacacagcatgaAATCTGCAAAGCAAACCGAACAGACAACAAGATATGCGGGACCTGGGAGTTTCGAGCCACGCAGTCAGTCAGCAGCCGGACAGTCACACAGAGAGGGCACTAAGCTGGGCCTGGGGAGAGGGGAGGTGGGAAGGAAGGAAGTCACGAATGCATCCGAAAGCAGCGGTTGCGTGATGAGCTTCGCGGTGGAGAGGGAAGGAACAGGTCCAGCGGAGAGGAAGGGAGGACTGGTGATTTCCTCATGACACGAGCGCATACGTTTCCGTGCAAAGCAGGTCTGAGGCAGAGAAGAAAGTTAACCATCAGTACTCAACTGGAATGaggacaaaataaatctgtatttatttatttatttatttatttatttattgcttggctatagctgcattttttttaaaaattccCACCTCCCAATCCATCCTTGTGCTGCCACTACTCTGAGCTTTAGTTTGTTGACTCTGCTTTATCGAGAGAAAACTTTTCAAGGTGAGGGCTCAAGCTTTTTGAGacatgtgcgtgcgtgtgtaaTTTCTATCCTTTGGTGGGAAGTGTGCACTAGCCCCAGTCAGGTTCACACCTTTAGAAACACCAGGAATGAAACTCGCAAGCATGTCTTTCCCCTTCGACCTCTTTAATCGTGCAGATACCCGAGTGACTCTCAGTTTTCCATCATCCTTTTCTGATAAGTGGccgaaggaaagaaagaaaagcaaagagaCGGAACATTAAGAGGGCTACCTCAGTCTCGTTCTCTCTGGGACCCATTCGTCAGACGTGTTCTGCTGAAATGACTGAAATGACAGCCTCCAGTTCCGGTCTCAGTCTGGATGTTACTCGCCCCTGCAGTGGGGCAGAGCCCAGCGAGTCACAGGGTCCTCGGCACTGTGGCCCCATGCGCTCAAGCACGCACCTGCTTATTAAATTGATTAGTATAAACACaaatcagttaaaataaatagttcacCTATCAATGACTTAGCTGCGCCACTAGctgcagaaaacattttgtgctgtgtgtgtgtttaagggACAGGGGATTGGCATGGGGGGTGGAGCACGTGCGCTTGGGTGAcgacaaatcaaaaCAGGAAAtcagagtatttttttttctggttggtttctctatttatgtatttatttatttattatttgcaataCAGGGCAGCACTGGAAATAAGCTAAGCTGAAATAATTACCTTTTCCTGACTGGGCAGCGCTATTGTATTCTACAATCAGATGTGAACAAtaattgtttgaaaataaagcaaatgctATTTCTGgcataataatacttttttttaaacacatgcaAACCTAGCGATCGTAACCCGACCTTGCTTTTGGGACCAGGTTCAGCCATCGACGAGACGCTTCCACATCCACTCTGGTGGCGTTTCTGTGGCTGGCCTGTGACCCGTTTCAGTTCTGTTCTTTGGTAGTGTCTGGCTACAGCGCATGCGTCACTGTTCTCCGTAAACTCGCAAAATCTGCAACGTCTTGCAATGTTATTGCTCTCTGTTTTCaccatgtaataataatgagtacTTATTCAAATAAGATAATatacactgaaaacacaaagatgattttttttactactgaacaaaaaaaaaaagaagtttaaagaaaaggcaaacaagTGAAATGCGAACCATTGGTGTCACCGATAGTCATTACTGTcgaaataagaaaaacaaagcacgTTGTACCcgtgtttcctttttaataataattacaaacattcaaataaagtgttttaatgAGATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195080 True 1987 lncRNA 0.44 2 11486492 11488514

Neighbor

gene id symbol gene type direction distance location
AMCG00005908 NA coding upstream 109 11477695 ~ 11486383 (+)
AMCG00005906 clg08h19orf60,cssa23h19orf60,LOC108439285,LOC107729673,LOC107676986,LOC103025814,LOC107593355 coding upstream 25749 11457498 ~ 11460743 (+)
AMCG00005874 plekhj1 coding upstream 142888 11339604 ~ 11343604 (+)
AMCG00005873 NA coding upstream 155371 11324831 ~ 11331121 (+)
AMCG00005853 LOC104941186,LOC107581323,LOC107678192 coding upstream 242694 11242839 ~ 11243798 (+)
AMCG00005865 NA coding downstream 6627 11495141 ~ 11507437 (+)
AMCG00005866 NA coding downstream 69935 11558449 ~ 11562627 (+)
AMCG00005885 NA coding downstream 194295 11682809 ~ 11686775 (+)
AMCG00005864 NA coding downstream 202307 11690821 ~ 11691592 (+)
AMCG00005883 celf5,LOC106956403 coding downstream 313918 11802432 ~ 11824637 (+)
G154863 NA non-coding upstream 20867 11449480 ~ 11465625 (+)
G154847 NA non-coding upstream 70163 11416065 ~ 11416329 (+)
G154831 NA non-coding upstream 107203 11378780 ~ 11379289 (+)
G154816 NA non-coding upstream 115580 11370424 ~ 11370912 (+)
G154815 dot1l non-coding upstream 124259 11362005 ~ 11362233 (+)
G154908 NA non-coding downstream 125156 11613670 ~ 11614369 (+)
G154915 NA non-coding downstream 143577 11632091 ~ 11638019 (+)
G154916 NA non-coding downstream 149810 11638324 ~ 11638774 (+)
G154917 NA non-coding downstream 151172 11639686 ~ 11639926 (+)
G154979 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700 non-coding downstream 418127 11906641 ~ 11912100 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other upstream 76820 11406306 ~ 11409672 (+)
G154798 NA other upstream 124722 11319964 ~ 11361770 (+)
G154756 NA other upstream 400481 11083161 ~ 11086011 (+)
AMCG00005840 LOC100304646,LOC107384145 other upstream 476138 11006798 ~ 11010354 (+)
G154636 LOC108435919,LOC108271001 other upstream 570763 10913397 ~ 10915729 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other downstream 113388 11601902 ~ 11610151 (+)
AMCG00005895 NA other downstream 414838 11903352 ~ 11906087 (+)
AMCG00005987 NA other downstream 1203302 12691816 ~ 12709543 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other downstream 1223264 12711778 ~ 12714571 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other downstream 1405606 12894120 ~ 12895452 (+)

Expression


Co-expression Network