G154908


Basic Information

Item Value
gene id G154908
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11613670 ~ 11614369 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU195120
gctgggggggcggCCATGGTCCTGGAGAGGGAGCACAAtatagcatgttttttttagggGGGTTGTTTCGAACTAAATTAAATTCCTTATTTGACGTTATTTTACTTTCACTCTGAGAAAAGGACTTGGATCAGTTCAGGGGTCCCCTCTCCCCGTACCTCACACTGTGGAACACGGGACCCCCCCACTTTAGATCAAAGAGCCCGAGCATTCTGCCAACCGCAGCATCCCGGACGTGTCACTCAAAAACAAGCCTGGCTTCCATTGGGCACAAGCCGACCAGACGGTGCCACCAAGTCACGCCATTTGTGATTTGCGATTGGGAGTTGGGGGGTCAAAGTTTAAATGAATTCTTGTCCCCTAGGACCACAGCCTCAGCTCACTAAAGCGATTACATGCCGAACTGATGAAAAATGTGCTCCCAGGCTTCACCAAACTGTTGTAATTGTGGTTTTAGGAGCAGGCTACTGCACCGtggctccccaggaccagggccgCCCCCCCGGTCTGATACTGTTCATTGTCCTTTCTGACGACACGCGCAGTATTGAATATGAAGCGCTCAGTTTCCCGGGCTGGCTTTGTATTTTCATGGTAGATAGTTGAGATCCTTGTCTTAGGGATTTAGTTGTCTTGTGTAGTATAAAGATGTCCtttgtatgtttctttatattgtaAAGTTTCTttagattggaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195120 True 700 lncRNA 0.48 1 11613670 11614369

Neighbor

gene id symbol gene type direction distance location
AMCG00005866 NA coding upstream 51043 11558449 ~ 11562627 (+)
AMCG00005865 NA coding upstream 106233 11495141 ~ 11507437 (+)
AMCG00005908 NA coding upstream 127287 11477695 ~ 11486383 (+)
AMCG00005906 clg08h19orf60,cssa23h19orf60,LOC108439285,LOC107729673,LOC107676986,LOC103025814,LOC107593355 coding upstream 152927 11457498 ~ 11460743 (+)
AMCG00005874 plekhj1 coding upstream 270066 11339604 ~ 11343604 (+)
AMCG00005885 NA coding downstream 68440 11682809 ~ 11686775 (+)
AMCG00005864 NA coding downstream 76452 11690821 ~ 11691592 (+)
AMCG00005883 celf5,LOC106956403 coding downstream 188063 11802432 ~ 11824637 (+)
AMCG00005896 NA coding downstream 317815 11932184 ~ 11935207 (+)
AMCG00005898 NA coding downstream 321480 11935849 ~ 11938386 (+)
G154879 NA non-coding upstream 125156 11486492 ~ 11488514 (+)
G154863 NA non-coding upstream 148045 11449480 ~ 11465625 (+)
G154847 NA non-coding upstream 197341 11416065 ~ 11416329 (+)
G154831 NA non-coding upstream 234381 11378780 ~ 11379289 (+)
G154816 NA non-coding upstream 242758 11370424 ~ 11370912 (+)
G154915 NA non-coding downstream 17722 11632091 ~ 11638019 (+)
G154916 NA non-coding downstream 23955 11638324 ~ 11638774 (+)
G154917 NA non-coding downstream 25317 11639686 ~ 11639926 (+)
G154979 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700 non-coding downstream 292272 11906641 ~ 11912100 (+)
G155017 NA non-coding downstream 356455 11970824 ~ 12207954 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other upstream 3519 11601902 ~ 11610151 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other upstream 203998 11406306 ~ 11409672 (+)
G154798 NA other upstream 251900 11319964 ~ 11361770 (+)
G154756 NA other upstream 527659 11083161 ~ 11086011 (+)
AMCG00005840 LOC100304646,LOC107384145 other upstream 603316 11006798 ~ 11010354 (+)
AMCG00005895 NA other downstream 288983 11903352 ~ 11906087 (+)
AMCG00005987 NA other downstream 1077447 12691816 ~ 12709543 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other downstream 1097409 12711778 ~ 12714571 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other downstream 1279751 12894120 ~ 12895452 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other downstream 1411395 13025764 ~ 13033408 (+)

Expression


Co-expression Network