G154909


Basic Information

Item Value
gene id G154909
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11613674 ~ 11614383 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU195122
ttccatctttttttttttttccaatctaaAGAAACTTtacaatataaagaaacatacaaaGGACATCTTTATACTACACAAGACAACTAAATCCCTAAGACAAGGATCTCAACTATCTACCATGAAAATACAAAGCCAGCCCGGGAAACTGAGCGCTTCATATTCAATACTGCGCGTGTCGTCAGAAAGGACAATGAACAGTATCAGACCGGGGGGGcggccctggtcctggggagccaCGGTGCAGTAGCCTGCTCCTAAAACCACAATTACAACAGTTTGGTGAAGCCTGGGAGCACATTTTTCATCAGTTCGGCATGTAATCGCTTTAGTGAGCTGAGGCTGTGGTCCTAGGGGACAAGAATTCATTTAAACTTTGACCCCCCAACTCCCAATCGCAAATCACAAATGGCGTGACTTGGTGGCACCGTCTGGTCGGCTTGTGCCCAATGGAAGCCAGGCTTGTTTTTGAGTGACACGTCCGGGATGCTGCGGTTGGCAGAATGCTCGGGCTCTTTGATCTAAAGTGGGGGGGTCCCGTGTTCCACAGTGTGAGGTACGGGGAGAGGGGACCCCTGAACTGATCCAAGTCCTTTTCTCAGAGTGAAAGTAAAATAACGTCAAATAAGGAATTTAATTTAGTTCGAAACAACCCccctaaaaaaaacatgctataTTGTGCTCCCTCTCCAGGACCATGGccgcccccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195122 True 710 lncRNA 0.47 1 11613674 11614383

Neighbor

gene id symbol gene type direction distance location
AMCG00005912 NA coding downstream 143914 11463610 ~ 11469760 (-)
AMCG00005911 NA coding downstream 156449 11453748 ~ 11457225 (-)
AMCG00005909 NA coding downstream 162180 11450086 ~ 11451494 (-)
AMCG00005913 cpamd8,LOC106584419 coding downstream 165091 11417894 ~ 11448583 (-)
AMCG00005914 LOC106584417 coding downstream 201485 11409667 ~ 11412189 (-)
AMCG00005890 NA coding upstream 1009 11615392 ~ 11616813 (-)
AMCG00005887 isyna1,LOC107671814,LOC107549817,LOC107726320 coding upstream 8045 11622428 ~ 11627932 (-)
AMCG00005888 ell,LOC106613783 coding upstream 22755 11637138 ~ 11649322 (-)
AMCG00005891 NA coding upstream 55970 11670353 ~ 11674352 (-)
AMCG00005889 NA coding upstream 60752 11675135 ~ 11680822 (-)
G154906 NA non-coding downstream 63 11569273 ~ 11613611 (-)
G154848 NA non-coding downstream 197286 11415817 ~ 11416388 (-)
G154817 NA non-coding downstream 293690 11309698 ~ 11319984 (-)
G154791 NA non-coding downstream 329276 11284128 ~ 11284398 (-)
G154782 NA non-coding downstream 405498 11207031 ~ 11208176 (-)
G154954 NA non-coding upstream 75357 11689740 ~ 11690048 (-)
G155003 NA non-coding upstream 317729 11932112 ~ 11932947 (-)
G155058 NA non-coding upstream 388757 12003140 ~ 12023672 (-)
G155059 NA non-coding upstream 393085 12007468 ~ 12017366 (-)
G155073 NA non-coding upstream 510778 12125161 ~ 12126128 (-)
AMCG00005875 NA other downstream 237136 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 252800 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 274539 11336595 ~ 11339135 (-)
AMCG00005876 oaz1,oaz1s other downstream 288606 11320260 ~ 11325068 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 747878 10849515 ~ 10865796 (-)
AMCG00005989 NA other upstream 1054873 12669256 ~ 12675994 (-)
AMCG00005992 NA other upstream 1064022 12678405 ~ 12711136 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 1229382 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 1282171 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 1305740 12920123 ~ 12949967 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G382345 NA misc CI01000190 null 227982 ~ 250040 (+)
rainbow trout (Oncorhynchus mykiss) G2207067 NA non-coding NC_050570.1 CM025857.1 17616364 ~ 17620151 (+)
tiger barb (Puntius tetrazona) G151738 NA non-coding NC_056720.1 CM032089.1 11075896 ~ 11077069 (+)
mexican tetra (Astyanax mexicanus) G139043 NA non-coding NC_035912.1 CM008315.1 5005492 ~ 5006291 (-)