G154954



Basic Information


Item Value
gene id G154954
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11689740 ~ 11690048 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU195177
gagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacgagctgagattaggagagtccctttaagagagtgctcctaatctcagctcgttacctgtataaaagacacctgggagacagaaatcttgctgattgataggggatcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctggatttgtttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtc

Function


GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA


RNA id representative length rna type GC content exon number start site end site
TU195177 True 309 lncRNA 0.36 1 11689740 11690048

Neighbor


gene id symbol gene type direction distance location
AMCG00005889 NA coding downstream 8918 11675135 ~ 11680822 (-)
AMCG00005891 NA coding downstream 15388 11670353 ~ 11674352 (-)
AMCG00005888 ell,LOC106613783 coding downstream 40418 11637138 ~ 11649322 (-)
AMCG00005887 isyna1,LOC107671814,LOC107549817,LOC107726320 coding downstream 61808 11622428 ~ 11627932 (-)
AMCG00005890 NA coding downstream 72927 11615392 ~ 11616813 (-)
AMCG00005884 rgma,LOC103371300 coding upstream 147953 11838001 ~ 11863038 (-)
AMCG00005900 NA coding upstream 206970 11897018 ~ 11902390 (-)
AMCG00005899 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700,LOC104964522 coding upstream 216518 11906566 ~ 11918065 (-)
AMCG00005901 NA coding upstream 228740 11918788 ~ 11930850 (-)
AMCG00005905 NA coding upstream 294615 11984663 ~ 11993731 (-)
G154909 NA non-coding downstream 75357 11613674 ~ 11614383 (-)
G154906 NA non-coding downstream 76129 11569273 ~ 11613611 (-)
G154848 NA non-coding downstream 273352 11415817 ~ 11416388 (-)
G154817 NA non-coding downstream 369756 11309698 ~ 11319984 (-)
G154791 NA non-coding downstream 405342 11284128 ~ 11284398 (-)
G155003 NA non-coding upstream 242064 11932112 ~ 11932947 (-)
G155058 NA non-coding upstream 313092 12003140 ~ 12023672 (-)
G155059 NA non-coding upstream 317420 12007468 ~ 12017366 (-)
G155073 NA non-coding upstream 435113 12125161 ~ 12126128 (-)
G155183 NA non-coding upstream 757472 12447520 ~ 12447719 (-)
AMCG00005875 NA other downstream 313202 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 328866 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 350605 11336595 ~ 11339135 (-)
AMCG00005876 oaz1,oaz1s other downstream 364672 11320260 ~ 11325068 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 823944 10849515 ~ 10865796 (-)
AMCG00005989 NA other upstream 979208 12669256 ~ 12675994 (-)
AMCG00005992 NA other upstream 988357 12678405 ~ 12711136 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 1153717 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 1206506 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 1230075 12920123 ~ 12949967 (-)

Expression



Co-expression Network