G155235


Basic Information

Item Value
gene id G155235
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12605723 ~ 12611445 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU195546
agttttttttttttattgctaaaaatcagggttattttcttNNAGAGCACACAAGTACCGGAGGGTTTTAGGCACCAAGCAGTCCAACAGAgtagatgtgttttgttttggttggtttCATTTCCCCTTGTGTAAGACAACTCTGCAACAAGGCATCTATTGTTCCTTTCCCTTCGCTCTGTACACTGTGCAATCGGCCCGTCTGTTTCAGGATTGACATGTCCACGGACAGTGTTGCCAGCCCTTCCTCTCGTAATAATAAGCTGCTGTTACAATGCCTATTGGCAAGCGCGTCTCTCAATTATCCCACACTGAAAATAGGAGTATAATTACAATGTCCTGCACTTCATACacagaatatatacagtatgtacacGTTTGAGCTGTGGGCAAATTATAGCGAGAATCACAACAGTGAAAATGTAGCTCATTTCAATCACAACAGTTGGGCTGTAATTggaattaattactttttacatgGAGGCAATTATAATTCACCACAGTTTTGTTGGATAGAGGGCTATTAAAGCTTTGGCAAACTCGAACCtgctattttacatttgccGTTGTCTTCGCTGGTGAAATTAAACATCGGGGGCTGAAAGTACTCCAGCTTTGTACCATAAGGCTGAAGTgaatatatattctatacagtattatacaagcacaaattgtatgtatatacagctctggaaaaaactgagagaccactccaagttcagaaataaatgttaagtggtctcaatgttttccagagctgtataaaatacacacaagcatatattttcttattttcctgaCCAggataacaaataaattattaacatgtatatgAATGCTTTGGATTTCTCTGCATTTAACTACAGGCTAATAGTTGATTAATTGTTCTCTCTGGTGAGAGAACAACAATGGTCGCTAGAATCTCGAAACTCCTTTCCCCCATCGTTACCACTGGCCTCTGTTGTAGAGCGGGGGGTTTAAGATGCCTACACACTGTGGGCATCCCCCTCTGTATTCCTGCGTCTGTATTAAAGACCTATTTcaggaatacaaatataaacctGCTGCACCCGTTTTTAAGTCCAGACAGATGTATAGAGAAGAGACTGGAACTCAAAGTAAGATTAGCACGTGTTGAAACAGAAATTTAAACAACTTTTAAACGAAGATGTGATAAAATGTCATCATTACTTGGTTTTCTAGTAATCTGAactcacacatatacatatacatatatatacatatacatatatatatatagttgatcATATTTGAAAAGTAATGATTTTCTAACAACTTTTGACAGCATATTTTTGTTGGCATACAAACAATCCGAATCGGATTACACCATTCAAAACTACAAAGCTGCACAGAGTTGTGGACAGTAACTGTGCTTACCATTTTAGCAAACGTGACATGTCAAAGAACGGTGAAATGAAACCAGAACAAGCGTTTCACCTGATGATAATCTAAACGGGGAAAGGCCAGTGTGATTCTGTGACCAGAAGGGCTCAGCCACTCAGATGGGAAAAGCAGGGTAGGGttgcacattcatattttatgcttaaaagaaaaacactggcTAGCATTTAAGTTTACTTTCACAGGCATTACTGTGCTTTCTCCCCATCTGTATGGGATCATTTATCCTCCACGCACACCTAAACTAAATCAGTGGATCACAGACCCAACCAGGGCATCCCTCTCAGCCCGGGAAAAGCTATAGGTGCACCGACACTTTGTTTTGTATACGTCTCAACCATAcgtctctttttcttttcaatattacagCAGCACCAAAACCACTGTTTTACCTGGGGACTGTTTCTTCTGTGCCTCATGTCAAATGTCAAACCCTATGGGAAAGGAATAAAAAGATTAGGCTCggtgtgatttaaaaaaaactaagaacgGCTTATCCGTCTGAGATCTGCTGCAGCTttgcgtgttttttttttttatcccataGAGAGaatataaaaattacaaaataagtggCGTACGCACCAGGTTCTTCACCAGCTGCTAATATTCCAGCACTTTTTTACCAGACGCATAGCTGCTTGAGGTGAAACAGCTCGGGAATCGACCTAGCGCTGTTCAGCCCAGAGGACCCGAATGGTACCCTTCAATTAATGAGTGACAGATAAGTGAAGTAGCCTGACTGAACTCATTCTGTTCTGAAGACTTCAGATTGCCACTGGGAGGAAATGGACACCTGTACGGGGAGCACAGGAATCAACCCAACTTCGTTTTTCAAACCAAACTCCTAAAAAGGCGTCTGTCAACGCAGTGCCAAACGTTCCTGTTCACAGTGGTTGAGTACAGGCATGCAGTCCAGTTTCAGAGGAATCTGGCATGCTTTTTCCATCAACTACTGCCAGCAATATACTCAGCTGGATGATTTCTTCTTTGGATACTGGTTACAGTGAATCAGCCCTtcgaaaaaaaattaaaacgcTAATAATCTCTTCATGCAAACGATCAGGGAGTCAAAAAAGGGGAAACTGCTGAACAGACATCACCCTACAGCCCAGTCACACCTTTCATTCCCTCCCATCTTTAGTCTCTAAAGTCTCTATTAAAAATGTCTCTGGGGTccgtaaaacatttaaaataaaataaaatacattctttgcAGCTTCATAAATCAgagtaaaaacaattaaaaaccaaaataatgttGAGTTTCAGCACGCAACCACGCGAACGTGCTGGACTCCCAGTGCACCGGACCGCAGCCCGCGTCCGCCGGTCTCTAGTGTATGATCCGCagacctcctcctcctccgggGCACCCAGCGAGTCCCTGTCCCCCGCAATATCTCCCATGATGCTGTGCAGTACAAGACCTGGGCCGCCCACGTCTCCTGGGTGCGTTCAGAAGAAGATGACGTCCTCCTTGCTGACCTCCTCTGTGATGGTGTAGGGGGGTGGGGCCTGCGTTTGAAGAGAGCTCTGGCTGTTGCGTTTGGGGATGCTGGCCGGGTAGACAGTCAGGGTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195546 True 3006 lncRNA 0.42 2 12605723 12611445

Neighbor

gene id symbol gene type direction distance location
AMCG00005916 NA coding downstream 195530 12365732 ~ 12410193 (-)
AMCG00005917 hiat1a,mfsd14a,LOC108413745,LOC107738165,LOC107659405,LOC102785602 coding downstream 242847 12349245 ~ 12362876 (-)
AMCG00005918 NA coding downstream 265225 12335317 ~ 12340498 (-)
AMCG00005919 NA coding downstream 279460 12325100 ~ 12326263 (-)
AMCG00005961 ncln,LOC106573831 coding downstream 324927 12267085 ~ 12280796 (-)
AMCG00005923 LOC103464111,LOC103138520,LOC102237431,LOC107100952,LOC103373679,LOC105900972,LOC100702697 coding upstream 17271 12628716 ~ 12642191 (-)
AMCG00005988 NA coding upstream 50907 12662352 ~ 12665106 (-)
AMCG00005991 NA coding upstream 106133 12717578 ~ 12722749 (-)
AMCG00005990 sppl2b,sppl2 coding upstream 115402 12726847 ~ 12735907 (-)
AMCG00006064 NA coding upstream 135484 12746929 ~ 12759443 (-)
G155183 NA non-coding downstream 158004 12447520 ~ 12447719 (-)
G155073 NA non-coding downstream 479595 12125161 ~ 12126128 (-)
G155058 NA non-coding downstream 582051 12003140 ~ 12023672 (-)
G155059 NA non-coding downstream 588357 12007468 ~ 12017366 (-)
G155003 NA non-coding downstream 672776 11932112 ~ 11932947 (-)
G155284 NA non-coding upstream 134978 12746423 ~ 12746716 (-)
G155326 NA non-coding upstream 279662 12891107 ~ 12891358 (-)
G155331 NA non-coding upstream 297249 12908694 ~ 12910923 (-)
G155390 gpx4,gpx4b,gpx4a,LOC107723219 non-coding upstream 416759 13028204 ~ 13033408 (-)
G155391 NA non-coding upstream 468040 13079485 ~ 13107493 (-)
AMCG00005875 NA other downstream 1229185 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 1244849 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 1266588 11336595 ~ 11339135 (-)
AMCG00005876 oaz1,oaz1s other downstream 1280655 11320260 ~ 11325068 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 1739927 10849515 ~ 10865796 (-)
AMCG00005989 NA other upstream 57811 12669256 ~ 12675994 (-)
AMCG00005992 NA other upstream 66960 12678405 ~ 12711136 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 232320 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 285109 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 308678 12920123 ~ 12949967 (-)

Expression


Co-expression Network