G155331


Basic Information

Item Value
gene id G155331
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12908694 ~ 12910923 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU195664
cccccgcccctctccctcacccctCATCTCTGCTTTGCCCCCGAGTGTTGTGCAGCTGCTGTCCCGTATTCCCTGTGATTTCTGTGGAATTTCTCCCTCGTCTCTGAAAGCTGTAACTTTAACGCTAACATTCCTTCCCgtcatcacttttttttttttttttttcgcccTCTTTTCATTTATTCTATTACAATTTCTTGTCGAGCCTCTGAATTTCCCCTCATTTACTGTGACGAGATTTCTTCAGCGCTGGGAAATTCAGCACTGATCATGTGACCCACTCCTGTCGAAGGGATGGCGAGGGATCAGTCTGGGGGGCAGCCGTCTGCCTCAGCCGGCTCCCGGAGTGCCCTGTCCGGAGCGGGGCGTGAAATGAGCACGTTCGGTAGGCAGCCTTTCCGCCCAGTGACTCGTTCAGGACGGTCTCGGAAGCAGCCGGCAAACGGATCGCCTTCCTTGCAGGTTTGGCGGAGGTACCGAAACGAATACGAGAGTCGAGTTTATCAATCTGTAATCTGGGGGAAACGAGCTGTTGGAGCAGTACTTTCCTAAGATGGGACCGTTCCAAATTCACTTGTGCTGCTGGTACCAGTAGTCCGAAATATCCTCTGCTCACATTCACTGTCCTAAAGCCAGTGCACCAGAGGGACGTTTTTAATGGGGGTgttgtctGCCTTTTGTGGCTGCTTGTGTTCTGCCCatctcttaaataaataaaataataaaaccaatctCTAAATAAAGTGAATTCTATACCTGAACGCACTGCATCTGATATTTTAAGATTAGAAaagtatttccaaatgtaaagCCTACAGTGGATATTTGAGAGCGTTCAATAACTGGGTTGATACTGACCACCCCAAGAGGACGATGGGTGGGTGGGGGCAGTGAAATACCTAGTTGGGGGTGATAAGAGCTTAAGTACTTTAATTATGTTAGCACCCATCTTGACACTACGACACTATACGCTGTccctggggagggggggtggtaaTGTCTTCCAAACCCCTAAACGTAAAACTGGTACAGAGGATCAGCAGTGAGTTCGCCCAGATGTTTTAATGCTGTACTTTGTTCTTTCTGAAACTTTTGAATAATTATAGTGCATCATTTCATGCCCTGCTACCACTTGCATTAAGAAGTTAGGGTTCACAGCGCACGATTGTATCTCCTTTATAGATAGCTTTAGATCGGTGGACTATGGGCTGGAGAGCTGACCCAGCGAAGTTGTGCATGTCGATGCTCTTTTCTTCCTTGTAAAGTATAATCTTAGGCACATTAGAGATTTAATATAGAAGCAATATCTACCATTTAATGTATATAACCTCACTCTGCAGATGACTTCCAGCCTTTTAAACCGAAACACACGCATTCTCTAAACTGGTCATCGAGGATCTAAATTTGGGCTTGATTGACGCGCCGCGGCTTTTGCAGAACCTTAACAGAAACCAAGGTCTTTCGGATACCGCCTTGGGAAAAGTCATGCGtgcatttttgttctgttctaatcgtttttttttttttaaatgaacttcAGAATCGGAAGAGGTGGATGTATAATTCTGGGAATGTTGTGCGTTTGACGGAGGAGTTTTAAGTGCAACACAAAATGTCTTAAGAAACCGTATGGGTCATTCAAGTAATTAAAAGTGAAACCTTTTGAGACGTATGACATTACACCCTATCCTGAGAACGTCTAGACTAGAAACTAATTCTGATTCCAGCCTTGTGAGGAATTCAGTACAGAGCACTCTATCAAATGCAAtcttgaatgtttattttttattttatttttgttctgcttttttgcATCTACCTGTTTCCTATAAGAAGTATACCTGGCATCCAGAGAACTCCGTCTTCACAATTAGCTGCCTTTTACTTTCCCTTGACCTCCTACTACTacggaaaaaactaaattgtgatACTAGCTGATTTATAAGCCTGAGTTTAAAGATTTAGATTTGAAATGTGCATCTATAACACTGGAAAGTGAGcgattttatcttttatttccttttttttaaagcgtgctttctctctcattcactCCCTTTATCAGtgattgtttctgtatttctgttaaGTGCAATCcactatgtaaatatatatgcgTCACTTAATTTGTGCATGGTTAATATGTATGGTGGATAAATACGTTGCCAAACCTACGTACaa
>TU195665
cccccgcccctctccctcacccctCATCTCTGCTTTGCCCCCGAGTGTTGTGCAGCTGCTGTCCCGTATTCCCTGTGATTTCTGTGGAATTTCTCCCTCGTCTCTGAAAGCTGTAACTTTAACGCTAACATTCCTTCCCgtcatcacttttttttttttttttttcgcccTCTTTTCATTTATTCTATTACAATTTCTTGTCGAGCCTCTGAATTTCCCCTCATTTACTGTGACGAGATTTCTTCAGCGCTGGGAAATTCAGCACTGATCATGTGACCCACTCCTGTCGAAGGGATGGCGAGGGATCAGTCTGGGGGGCAGCCGTCTGCCTCAGCCGGCTCCCGGAGTGCCCTGTCCGGAGCGGGGCGTGAAATGAGCACGTTCGGTAGGCAGCCTTTCCGCCCAGTGACTCGTTCAGGACGGTCTCGGAAGCAGCCGGCAAACGGATCGCCTTCCTTGCAGGTTTGGCGGAGGTACCGAAACGAATACGAGAGTCGAGTTTATCAATCTGTAATCTGGGGGAAACGAGCTGTTGGAGCAGTACTTTCCTAAGATGGGACCGTTCCAAATTCACTTGTGCTGCTGGTACCAGTAGTCCGAAATATCCTCTGCTCACATTCACTGTCCTAAAGCCAGTGCACCAGAGGGACGTTTTTAATGGGGGggtgttgtctGCCTTTTGTGGCTGCTTGTGTTCTGCCCatctcttaaataaataaaataataaaaccaatctCTAAATAAAGTGAATTCTATACCTGAACGCACTGCATCTGATATTTTAAGATTAGAAaagtatttccaaatgtaaagCCTACAGTGGATATTTGAGAGCGTTCAATAACTGGGTTGATACTGACCACCCCAAGAGGACGATGGGTGGGTGGGGGCAGTGAAATACCTAGTTGGGGGTGATAAGAGCTTAAGTACTTTAATTATGTTAGCACCCATCTTGACACTACGACACTATACGCTGTccctggggagggggggtggtaaTGTCTTCCAAACCCCTAAACGTAAAACTGGTACAGAGGATCAGCAGTGAGTTCGCCCAGATGTTTTAATGCTGTACTTTGTTCTTTCTGAAACTTTTGAATAATTATAGTGCATCATTTCATGCCCTGCTACCACTTGCATTAAGAAGTTAGGGTTCACAGCGCACGATTGTATCTCCTTTATAGATAGCTTTAGATCGGTGGACTATGGGCTGGAGAGCTGACCCAGCGAAGTTGTGCATGTCGATGCTCTTTTCTTCCTTGTAAAGTATAATCTTAGGCACATTAGAGATTTAATATAGAAGCAATATCTACCATTTAATGTATATAACCTCACTCTGCAGATGACTTCCAGCCTTTTAAACCGAAACACACGCATTCTCTAAACTGGTCATCGAGGATCTAAATTTGGGCTTGATTGACGCGCCGCGGCTTTTGCAGAACCTTAACAGAAACCAAGGTCTTTCGGATACCGCCTTGGGAAAAGTCATGCGtgcatttttgttctgttctaatcgtttttttttttttaaatgaacttcAGAATCGGAAGAGGTGGATGTATAATTCTGGGAATGTTGTGCGTTTGACGGAGGAGTTTTAAGTGCAACACAAAATGTCTTAAGAAACCGTATGGGTCATTCAAGTAATTAAAAGTGAAACCTTTTGAGACGTATGACATTACACCCTATCCTGAGAACGTCTAGACTAGAAACTAATTCTGATTCCAGCCTTGTGAGGAATTCAGTACAGAGCACTCTATCAAATGCAAtcttgaatgtttattttttattttatttttgttctgcttttttgcATCTACCTGTTTCCTATAAGAAGTATACCTGGCATCCAGAGAACTCCGTCTTCACAATTAGCTGCCTTTTACTTTCCCTTGACCTCCTACTACTacggaaaaaactaaattgtgatACTAGCTGATTTATAAGCCTGAGTTTAAAGATTTAGATTTGAAATGTGCATCTATAACACTGGAAAGTGAGcgattttatcttttatttccttttttttaaagcgtgctttctctctcattcactCCCTTTATCAGtgattgtttctgtatttctgttaaGTGCAATCcactatgtaaatatatatgcgTCACTTAATTTGTGCATGGTTAATATGTATGGTGGATAAATACGTTGCCAAACCTACGTACaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195664 False 2181 lncRNA 0.43 2 12908694 12910923
TU195665 True 2183 lncRNA 0.43 2 12908694 12910923

Neighbor

gene id symbol gene type direction distance location
AMCG00005938 hnrnpm,LOC105900966 coding downstream 18219 12881785 ~ 12890475 (-)
AMCG00005937 timm44,LOC108441293,LOC107660209,LOC107561596,LOC106954366 coding downstream 28097 12872911 ~ 12880597 (-)
AMCG00006064 NA coding downstream 149251 12746929 ~ 12759443 (-)
AMCG00005990 sppl2b,sppl2 coding downstream 172787 12726847 ~ 12735907 (-)
AMCG00005991 NA coding downstream 185945 12717578 ~ 12722749 (-)
AMCG00005967 polr2e,LOC107599482,LOC107669821 coding upstream 111438 13022361 ~ 13025617 (-)
AMCG00005948 NA coding upstream 258154 13169077 ~ 13171020 (-)
AMCG00005947 NA coding upstream 261963 13172886 ~ 13181536 (-)
AMCG00005943 NA coding upstream 329559 13240482 ~ 13244787 (-)
AMCG00005944 NA coding upstream 336831 13247754 ~ 13250688 (-)
G155326 NA non-coding downstream 17336 12891107 ~ 12891358 (-)
G155284 NA non-coding downstream 161978 12746423 ~ 12746716 (-)
G155235 NA non-coding downstream 297249 12605723 ~ 12611445 (-)
G155183 NA non-coding downstream 460975 12447520 ~ 12447719 (-)
G155073 NA non-coding downstream 782566 12125161 ~ 12126128 (-)
G155390 gpx4,gpx4b,gpx4a,LOC107723219 non-coding upstream 117281 13028204 ~ 13033408 (-)
G155391 NA non-coding upstream 168562 13079485 ~ 13107493 (-)
G155400 NA non-coding upstream 196889 13107812 ~ 13108067 (-)
G155426 NA non-coding upstream 341199 13252122 ~ 13252489 (-)
G155429 NA non-coding upstream 356040 13266963 ~ 13267162 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other downstream 53891 12843765 ~ 12854803 (-)
AMCG00005992 NA other downstream 197558 12678405 ~ 12711136 (-)
AMCG00005989 NA other downstream 232700 12669256 ~ 12675994 (-)
AMCG00005875 NA other downstream 1532156 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 1547820 11349245 ~ 11360874 (-)
AMCG00005939 LOC100697221 other upstream 9200 12920123 ~ 12949967 (-)
AMCG00005966 sbno2,LOC106573581 other upstream 125501 13036424 ~ 13051719 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other upstream 212634 13123557 ~ 13156318 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other upstream 657544 13568467 ~ 13583351 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other upstream 753141 13664064 ~ 13698534 (-)

Expression


Co-expression Network