G155354


Basic Information

Item Value
gene id G155354
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13036477 ~ 13039375 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU195699
ttttctagaaaAGTccctgacatttgtttttgtgtttgttttgtaacgTATTAACTACAGAAGAGGATtataatctaaaacaaaatccactAGGAAGTcccttaaatataaataataatatttataatcataACATCAACAAACAATAATCATAACACAAGACATTGCTTTTATCCCATTTTTACAAGAACACATACCTTAACTGTCCTAACACAAGGACCCCAAAACTtatatctgtttctttctataCAAAAGTTTTGTGACTTTGCAGCAGGTGAGACTCGTTCGCAAAAAAGTGATGTCGTGAGATTCGTTTTACTGTGAACAAGTGACGTTATTTCTCTTCGAAGCGTAAACAGTACTTTGACTCTTTCTTTATCAGGTCGGTTGCTTTATTGCTAAGTTGTGTGCCTTCTTTTAGGTTTCAAAAAGGAGATGAAATACTAGATCTTGGCTTGGGTTTCCATTCACCACCAAGCGCGAGTGAGGAGCTGAGGTTTTAGATAGGTGCTGCGGAGACAGTGCAGAGCAGGTCAGGTGACACACTAGTGTGTCAAAACATCGACTACAATAAATAAGATACCACTGATTTCAGTAGAAATATATACAAGTATAGTAAAAGACTGCATTTCTTAGCATGTTCCAAAGGCACTGTGAGAAAAAGGAGgctgttattgatttatttatcccCCCACACTGTGGAGAAGTACTGATGGGAGGTAAGGCTAAACCTACTGGGTATGAAGACCTTAACACGGGTCGGGTTCAATGTGCATCCAACTTCGGTTTATTGGTTTGCTTTCTTGGGACGTTTAATACTGCTTCTTTGCATCACACGTGTGTTCGCGCCGTCGCCGAGGTCAGGCTCACGCGTGACTGCATTACGAGAGGGCACTTCCGTCCCACTTGCGTTTCGGTTCGGTTTGGTTCTGAACACGAGAAATGGGTTTAGTCCAGTTTGAGTCTACACCGCGCACGTGAGGAATCCGAAGCGTACTAAAGCATTTTGGACAGGAGTTCGCAACAGTGCggagaggaggtggggggaCTTGTATTGTGGTTGCGTTATGGCTCTTAATCCTTTTTTAACATCATATCCTGCTCAACCTTCTCTAGCCAGCAGGGGGCGACGTAGTCCGACCAAAACGAGAGAGCAAAACTCGACGGGAGAGCGTCGGGGACAACAAGCACAGACAGGTGAACTAGACCGACGGGAGAGGGAGTTTAAAAGCACATCTTTCTTTTGCCTTGAAGACTAAGAACTAAAACAGTTTCAAACCGACAGACATCTCACCCACTCCTACACGTCTAAGGGGCACAGTCCTATCCCTCCcggacagacgcacacacacagacagacagacagacagacaggtctGGTACAGAAAGccctactgtttaaaaacaagcaGCGTGACTTTCTCCGATTTCAGACGCCCACTGAACTCTGTATTCTGCTTCCACAGTAAGCAATGCATTTCAGAAAGATTCTCTCGTGTCTGAAATCTAGACTGAAACTTCTCTCTCTCGAGGCTACGAGCGTCAGAACAGTATACTGCGGACCCAAAGCGACGACCCTGCTGTCGGGACAGACACTGGGGCAGGGGGTGAGGAAGGAAGTTcattacaaatcaaataaaaaaaaatatatattcatgatAAATACCAGCACTTTGAAGAAAACGTGACCCTAGTTTAGTTCCCGGTCTCTGGGGTCGACTCCGAAAGCCACATGGGCCTCCCTGGTCCTGCCGGGCACTCGACCCGCAGGAATTACAGATGTCTTTCCGTCAGACTTGATTTGATTCCCGTTTCCGGTCCCTAGTTGCAATCCCACTGTGCCCGGGCGTGCAAACACGGCAGCCCCGCTTCCCTGCAGCCACACAGCTGCCCCACCACCCCCAGCTCGCCCCGACCCAGAGGCTCCTCGCTGGGTAGCCGGAACTGGATGACCGACTGGCGCTCCGGGTTGGTCCGCAGCATGATGTCCAGGACCTCGCGGACGTTGATGGCGTCGCTGCCGCTGCAGTGGCCGTTGGGCAGCGAGGGCGCCGATTGGGCTGGGGCCAGGGGGGAGGCGAAGGGGACCGGGGAGGAGGCCGCGGTGGGGTGGGACGTGGAGGCCTTGCTGGGGGCGGGGGCGGAGGAGGACGGGGCGGCCTGCGTGGAGAGCGGGTAGGAGGGCGGGAGGCTCAGGGCCGCGTCGTCGAAGGAGAAGGCGTCCAGGAAGTCCTGCGTGGACAGGTTAGACAGAGCCGCCTGGGTctcttgctgttgctgctgctgctgctgctgctgctgctgctgctgctgttgttgtgtgtgcagGCTGCTCAGCTGCGTGTGCGAGATGAACGACTCCAAGCTGAAGTCCTCCGGCGGTGGGAGGGCGCCCGTCGTGCCCAGCCCCGTGCCACTgtctggggtgggggaggggctgGTGGTGAGGTCCAGGATTTCCTCCAAGGAGTTGACGTGGTTCCTGAGGGGCAGCATGCCCAGGCTGGACAGAGTGGACATGGCGGGGAGACTGGATAGCAGGGAATGGGGATTGGAGAGGTCAAGGGGCACCTGCCTGGCGTAAAGGTTTTGCAGGAAGCTGTGCGCCCGCTGCTCCTGGGCCTGCTGCTCCTGTGCCCGCTGCTCCTGCGCCCGCTGCTCCTGCGCCCGCTGCTCCTGCAGGGCCCGCTGCTCCTGCGCTCGCTGCTCCCTCTCCCGGCGCCTCCTCTTCACCTCCTCGTCCATCTGTGTGAGTTCGTCCCGCACCCGGGCCACGCAGTTCTCTGGGATCTTGATACCTgagaggagcagagagagagagagagagaggcaggaagAGTGAGAATCAGGAACACCAGAAGTACGCAGAgaaattccaaattccaaattccaattctTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195699 True 2899 lncRNA 0.53 1 13036477 13039375

Neighbor

gene id symbol gene type direction distance location
AMCG00005963 NA coding upstream 16183 12995584 ~ 13020294 (+)
AMCG00005965 NA coding upstream 40997 12969874 ~ 12995480 (+)
AMCG00006062 fbn3,fbn2b,LOC106613712,LOC106573567,LOC108441289 coding upstream 196813 12785301 ~ 12839664 (+)
AMCG00005986 NA coding upstream 294586 12739471 ~ 12741891 (+)
AMCG00005985 lsm7,LOC107593053 coding upstream 297953 12736127 ~ 12738524 (+)
AMCG00005925 NA coding downstream 57694 13097069 ~ 13107823 (+)
AMCG00005926 hapln4 coding downstream 71469 13110844 ~ 13117181 (+)
AMCG00005942 NA coding downstream 198947 13238322 ~ 13240049 (+)
AMCG00005941 borcs8,LOC107554813,LOC107728595 coding downstream 205419 13244794 ~ 13250175 (+)
AMCG00005940 NA coding downstream 227007 13266382 ~ 13273509 (+)
G155353 NA non-coding upstream 117 13034087 ~ 13036360 (+)
G155351 NA non-coding upstream 11009 13024620 ~ 13025468 (+)
G155350 NA non-coding upstream 13441 13022334 ~ 13023036 (+)
G155297 NA non-coding upstream 99358 12920100 ~ 12937119 (+)
G155313 NA non-coding upstream 104602 12931316 ~ 12931875 (+)
G155355 NA non-coding downstream 61 13039436 ~ 13039635 (+)
G155356 NA non-coding downstream 1144 13040519 ~ 13040980 (+)
G155357 NA non-coding downstream 4894 13044269 ~ 13044559 (+)
G155358 NA non-coding downstream 5775 13045150 ~ 13046036 (+)
G155359 NA non-coding downstream 8200 13047575 ~ 13047895 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other upstream 3069 13025764 ~ 13033408 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other upstream 141025 12894120 ~ 12895452 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other upstream 321906 12711778 ~ 12714571 (+)
AMCG00005987 NA other upstream 326934 12691816 ~ 12709543 (+)
AMCG00005895 NA other upstream 1130390 11903352 ~ 11906087 (+)
G155637 eps15l1,LOC107592720 other downstream 1058429 14097804 ~ 14098696 (+)
G155638 NA other downstream 1068798 14108173 ~ 14109870 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other downstream 1336620 14375995 ~ 14383580 (+)
AMCG00006022 NA other downstream 1381007 14420382 ~ 14424746 (+)
AMCG00006034 vmac,LOC106573562 other downstream 1612824 14652199 ~ 14659497 (+)

Expression


Co-expression Network