G155550


Basic Information

Item Value
gene id G155550
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13786006 ~ 13787634 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU195941
GGGGGAGGTAAACAAGATGGCGGCAGCCTGACAGCAGCTGCAGTAAAGGGATAAAACCTCTCGTCTTCACGCCGACAACCGACACACGCcagggggaagaaaaaggagaagaaaccCGAGCAGACCCACAGGCTACCTCTCTGCAGTGCGAGCCGGGGATATTAGCGAGAGGAAGTGAGCCATATCGACCTGTCTTTATTAGAGGCTGGATAGCGTACCCGTACTTCTAATTCGCTTCAACTGTACTTGACACCGTGTGTGATGATACCGGACTAGTGCTGCAGTTTGCAGGTCCTGGCGAGAAGAGAGACACTTTGGGGGAAGAAATTGAGCCAGTAACGGCGTTTGGAAATACAGCAGTTAAATAGTAAATAAAGCCAAGGCGGAGCGGGTCCGTTGTCTCTATCGTGTGCAGATATCCAAGTGTGGAGCCAAGACCGTGATTTATAGGAGCCGGCATTAACTCTTTGTTGGTGTGCTGAAAATCTTAAGGACATGAAATCGGGGGGAGACATTGGCGTGCCCTcgtttttaaaatagtttttaagcAATACCAAAGAAGAAAATCCCGTGTTGAGTAAAAACCAAAATAGTATTTGCCACTtgggtggaaaaataaaataaggttgAGGCACTGATGCACACTCCACGGATTAAATGGACGTCTGGTACCGTGAGGTAGAATTTGAACCAAAAACATCAACCAGCACCATCCTCTGCGCTGCTTTCTTGTGGGCTGAGGATACGATCACACCTTGAGATGCCCAGGACTGAAACTGATGGATTGTAATCTGAGGAGTGGACCACAAATCACTTGAACTGAAAAGCTCCctttaataaactgaaattaaacccCATTGCCTCCCAAGGATTTTTCCTGCTCTGGTTCCTTCTCTACGACTCGCATTGTCCGAGCCTTGGGAAGGAGAATAATACACACTATGCTTGAAGTGTAGGCATATCCTTACAGTTGGGTTTCCCTAGAGGAGACTGCCAGACCAGGTGACGGTGGTCCTTCTTTTGTTTGcgattgttttgtttctattttccaCCGGGTACAGTCTTCTTACGTTCCCCCAacccaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195941 True 1087 lncRNA 0.47 2 13786006 13787634

Neighbor

gene id symbol gene type direction distance location
AMCG00005972 stk11 coding downstream 121 13772482 ~ 13785885 (-)
AMCG00005969 NA coding downstream 24576 13751988 ~ 13761430 (-)
AMCG00005970 atp5d,LOC107554819,LOC106613744,LOC107719603 coding downstream 67578 13714984 ~ 13718428 (-)
AMCG00005978 LOC106573600,LOC105011525,LOC106613740 coding downstream 218525 13561072 ~ 13567481 (-)
AMCG00005976 NA coding downstream 252122 13530876 ~ 13533884 (-)
AMCG00006003 sugp1,LOC107729615,LOC107563402 coding upstream 5728 13793362 ~ 13800830 (-)
AMCG00006005 nmrk2,LOC106511986,LOC103138501,LOC101469484,LOC103464095,LOC102302661 coding upstream 26558 13814192 ~ 13827586 (-)
AMCG00006004 NA coding upstream 43283 13830917 ~ 13841962 (-)
AMCG00005983 NA coding upstream 129701 13917335 ~ 13924862 (-)
AMCG00005982 NA coding upstream 139276 13926910 ~ 13932804 (-)
G155521 NA non-coding downstream 108669 13675209 ~ 13677337 (-)
G155503 NA non-coding downstream 301987 13466970 ~ 13484019 (-)
G155502 NA non-coding downstream 320418 13464455 ~ 13465588 (-)
G155431 NA non-coding downstream 511313 13273640 ~ 13274693 (-)
G155429 NA non-coding downstream 518844 13266963 ~ 13267162 (-)
G155591 NA non-coding upstream 89089 13876723 ~ 13881170 (-)
G155593 NA non-coding upstream 95957 13883591 ~ 13884628 (-)
G155652 NA non-coding upstream 301702 14089336 ~ 14092457 (-)
G155655 NA non-coding upstream 378545 14166179 ~ 14166404 (-)
G155701 NA non-coding upstream 512841 14300475 ~ 14305697 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 87472 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 202655 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 629688 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 734287 13036424 ~ 13051719 (-)
AMCG00005936 march2 other downstream 814600 12896554 ~ 12971406 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other upstream 371497 14159131 ~ 14171607 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 549257 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 721599 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 892163 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 994872 14782506 ~ 14784280 (-)

Expression


Co-expression Network