G155593


Basic Information

Item Value
gene id G155593
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13883591 ~ 13884628 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU196003
ttatggggatgtttctgtTTGGTTGTTTCATTCAGAAATAAAGTCAACGACAACAAAATTACACATGACATCGTTTATCATTTACAATGTGGCCACAGTGGCACCCTACTCAGGTTTTTAGTCACAATTCACCACTATAATTAACTATTACTATTGTGAACTATTATATTGTTagacaattttaataaaaaaaaaaaaatacgctCATACAAATCAAGGCAATACTTCCATGTTCTtgataaactaaaaacagacaTTGACTGTTCACAACAAGCCATGTCAGCTTTTCCATACAGTTAACGCTAACCTACATACCTGTTCGATATGAAAAGTCTTAAACATGCCTTTCAAAACAGTAGACAAAGGATGCATCAGCGAAAGTCTAAGCATCGATTAAAATTCCCAACTCTACTCTGCCTACCGAGAGATGCTGGATGGTCTTATGTTGTCTCAAGCTGTAGTACGTTTCAAAAGCTTCTTCTAGAGGATTTGTATTGAGGTTCCACAAGCCATTTCCTGTCCAGGCTCCAAAAATGGCTACCCCCCCATAATCTAGGACTGAGTTTCATTCCACATTTTTATCTGCTTGTTTGTTCACTCAATCCAACATCCGTCGACACAGCAATACTGAACTCAGTCGAGGGAGTCTGCTTGTAAAAAGGTATCTCTGAATGGATTCATGGTGGTGCTTATTAACCAGTAGGTTTTAGCTGTGTCCCCAAGGCCAGGTTTGGTACCTGTGGGTCTCTGATGTGATGGACAGATCAGTGGCAGGAGTGGACGCTTGGAAAAAGGGGTGCGATATCTAGGTGGTCCGCAGTCACATGATGGCACACTTCTCTTCAGCGGCTAGTTTGATCTCCGTCATGGTGACTTGGGCTTTGTTCTTGAGGACATCAAAGTCCATGTTCTGAATCTTGCCCAGCAGAGTGTCGctcgcctcctcctcctcctcgtcctcttcCACCATCTTGGCCAGGTCCTCAGGAAGGTCCACATCCCCCCCAACCATCTGGATCTGAGCATCATCCTTCTCGc

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU196003 True 1038 lncRNA 0.43 1 13883591 13884628

Neighbor

gene id symbol gene type direction distance location
AMCG00006004 NA coding downstream 41629 13830917 ~ 13841962 (-)
AMCG00006005 nmrk2,LOC106511986,LOC103138501,LOC101469484,LOC103464095,LOC102302661 coding downstream 56005 13814192 ~ 13827586 (-)
AMCG00006003 sugp1,LOC107729615,LOC107563402 coding downstream 82761 13793362 ~ 13800830 (-)
AMCG00005972 stk11 coding downstream 97706 13772482 ~ 13785885 (-)
AMCG00005969 NA coding downstream 122161 13751988 ~ 13761430 (-)
AMCG00005983 NA coding upstream 32707 13917335 ~ 13924862 (-)
AMCG00005982 NA coding upstream 42282 13926910 ~ 13932804 (-)
AMCG00005999 NA coding upstream 208272 14092900 ~ 14136611 (-)
AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding upstream 289217 14173845 ~ 14179120 (-)
AMCG00005996 LOC106613681 coding upstream 302620 14187248 ~ 14198914 (-)
G155591 NA non-coding downstream 2421 13876723 ~ 13881170 (-)
G155550 NA non-coding downstream 95957 13786006 ~ 13787634 (-)
G155521 NA non-coding downstream 206254 13675209 ~ 13677337 (-)
G155503 NA non-coding downstream 399572 13466970 ~ 13484019 (-)
G155502 NA non-coding downstream 418003 13464455 ~ 13465588 (-)
G155652 NA non-coding upstream 204708 14089336 ~ 14092457 (-)
G155655 NA non-coding upstream 281551 14166179 ~ 14166404 (-)
G155701 NA non-coding upstream 415847 14300475 ~ 14305697 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding upstream 434351 14318979 ~ 14323114 (-)
G155717 NA non-coding upstream 485133 14369761 ~ 14370182 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 185057 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 300240 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 727273 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 831872 13036424 ~ 13051719 (-)
AMCG00005939 LOC100697221 other downstream 933624 12920123 ~ 12949967 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other upstream 274503 14159131 ~ 14171607 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 452263 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 624605 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 795169 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 897878 14782506 ~ 14784280 (-)

Expression


Co-expression Network