G155701


Basic Information

Item Value
gene id G155701
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14300475 ~ 14305697 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU196134
ACGTCAGTGGCCTTCTTCTCAGACAGTTCCAGTTTCTCCTGGGCATCTTTCAATGCTTCAGAGTATTTGTCCAGCTCGTCCTCAGTACTTTTCAGCTTCTTCTGCAAGCCAATCAGCTCATCTTCCAGCCTGCTTGCACTTGTCCTCCGCAGCTTTCTTGTCGGACTCTGCCTGCTCCGCGCGGTCGATGGCATTCTCCTTGTCCAGCTTCAGCATCTGCATCTTCTTCTTGATGGCTTCCATTTTGGCGTTTGTTTTGGGGGTCTGGGGTTGCTcaaggaaatgaagaaaaaccaaaaaccaaaacaccaaaaaaaaaaagaaatcaaattaaatcaaagcagCTCAGTCGACAACAAGAAGAAATCAGGAGAAAAAGAGGACCGGAGAGCCTTCAATGGTAATGCTGGAGCCCCACacaaacagagggagagagagagagagagagagagtaagggAGAGAACACCAGGGATACAGACTGAGACCCAGTGCTGCCTAGATAGCTTTAAACTCCTACAAACACCCGACTCTAGGTTTTGGAGAGAGCCGTGGTCCCCGGTGAC
>TU196135
ACGTCAGTGGCCTTCTTCTCAGACAGTTCCAGTTTCTCCTGGGCATCTTTCAATGCTTCAGAGTATTTGTCCAGCTCGTCCTCAGTACTTTTCAGCTTCTTCTGCAAGCTGCTTGCACTTGTCCTCCGCAGCTTTCTTGTCGGACTCTGCCTGCTCCGCGCGGTCGATGGCATTCTCCTTGTCCAGCTTCAGCATCTGCATCTTCTTCTTGATGGCTTCCATTTTGGCGTTTGTTTTGGGGGTCTGGGGTTGCTcaaggaaatgaagaaaaaccaaaaaccaaaacaccaaaaaaaaaaagaaatcaaattaaatcaaagcagCTCAGTCGACAACAAGAAGAAATCAGGAGAAAAAGAGGACCGGAGAGCCTTCAATGGTAATGCTGGAGCCCCACacaaacagagggagagagagagagagagagagagtaagggAGAGAACACCAGGGATACAGACTGAGACCCAGTGCTGCCTAGATAGCTTTAAACTCCTACAAACACCCGACTCTAGGTTTTGGAGAGAGCCGTGGTCCCCGGTGAC

Function

NR:

description
PREDICTED: transcription factor GATA-5-like

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU196134 True 564 lncRNA 0.48 2 14300475 14305697
TU196135 False 543 lncRNA 0.48 2 14300475 14305697

Neighbor

gene id symbol gene type direction distance location
AMCG00006014 NA coding downstream 28466 14264388 ~ 14272009 (-)
AMCG00006012 NA coding downstream 43737 14249791 ~ 14256738 (-)
AMCG00005996 LOC106613681 coding downstream 101561 14187248 ~ 14198914 (-)
AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding downstream 121355 14173845 ~ 14179120 (-)
AMCG00005999 NA coding downstream 163864 14092900 ~ 14136611 (-)
AMCG00006015 cib3,LOC107687907 coding upstream 64712 14370409 ~ 14374943 (-)
AMCG00006028 NA coding upstream 77973 14383670 ~ 14391108 (-)
AMCG00006029 NA coding upstream 87757 14393454 ~ 14401173 (-)
AMCG00006027 NA coding upstream 136213 14441910 ~ 14445493 (-)
AMCG00006026 NA coding upstream 147321 14453018 ~ 14458341 (-)
G155655 NA non-coding downstream 134071 14166179 ~ 14166404 (-)
G155652 NA non-coding downstream 208018 14089336 ~ 14092457 (-)
G155593 NA non-coding downstream 415847 13883591 ~ 13884628 (-)
G155591 NA non-coding downstream 419305 13876723 ~ 13881170 (-)
G155550 NA non-coding downstream 512841 13786006 ~ 13787634 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding upstream 13282 14318979 ~ 14323114 (-)
G155717 NA non-coding upstream 64064 14369761 ~ 14370182 (-)
G155754 NA non-coding upstream 116807 14422504 ~ 14424746 (-)
G155768 NA non-coding upstream 183593 14489290 ~ 14491929 (-)
G155783 NA non-coding upstream 263865 14569562 ~ 14569836 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 128868 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 601941 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 717124 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 1144157 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 1248756 13036424 ~ 13051719 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 31194 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 203536 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 374100 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 476809 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 692803 14998500 ~ 15007979 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G334754 NA non-coding CI01000115 null 2591179 ~ 2702799 (-)
striped catfish (Pangasianodon hypophthalmus) G321462 NA unknown NC_047615.1 CM018561.1 16357574 ~ 16367004 (-)
tiger barb (Puntius tetrazona) G190067 tpm4b,LOC107696831,LOC107687908,LOC107552722,LOC107754596,LOC107750945 unknown NW_025048442.1 JAEQBD010000787.1 31556 ~ 42751 (+)