G155703 (tpm4,LOC107653617,LOC107757474)


Basic Information

Item Value
gene id G155703
gene name tpm4,LOC107653617,LOC107757474
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14318979 ~ 14323114 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU196137
CCCAGGGAGCCGATTGATGTGGTCAGACAATCACCAACTCACAAACACCCCCGATTAGATCTAACAGGGGTATAGTGGGTCTGGTAAACTGATGGATCGAATGTGGAATTCCAAAAATGGTAAAAGAAGCCAAAGCAGACATCCAATAATTCTGTACTTACTTTTTCCAATATGGTGGATACAGGTCTATAAATAAGACTTAAATACTTCcctgtcacacaaacacattccaCTGTTGGATTTGAGCAGATTCAGGTCATTTAGTTAACTGATAATTAACTATACCTTGAATGGTTTGGGTTTAATCTTTGACTGTCTTTCCATTACAGggaatgaacaaaaaaaaagttatcaaatattcatggatttaaaattaaacctatgagttcaaaacatttaaaaaaaggtgaaCTTTGCAGTCACATGAGTGTCCAAATGCTCTTTTTTTGGGGCCTAATGAAAGGACGTCATGAGGTAGCACACTGGAGTGGATATGAAGCAGAAGGAAGGAGGAAATGAATGGGTATTTTGTAGGACAGAAAGAACTTTATTAGAGCTTCATTTTTACAGAAAGGGTCTCGCAGGCAGACAAGTCAGAAGAAAAGGCATGGTAGTGAATGGCCAGTGTTTGAAGATGGAAGAGGGAAGGCTTTTTTGAAAAGGGACAGGCGTTCTGAATAGGACAGGCTGCCGTGGAGNNNNNNNNNNAGGTCATGTCATTGAGGGCATGGTCCAGCTCCTCGCTGATGGCCTTGTACTTCAGCTTCTGAGCATACAGTTCATCTGGAGGTCAAAGGGCAGGAGGAGCAGAGGAACAGCAgcaacagaagaagaagaggggCAGCGATGAGCGATGGAAGAAAGGGAAGGAATGACAAAGACAAGGaatggacacagagagagagaaaaaaaaggaaaaacaaaaggtcaGAGAGAGCAATAAAAGTTACAAGGTAAACTACACACTCAACTCCATCAGAATAACCGATACTCCAGGAGGTTTGATCCGATTACTAAAAAGTGCAACTGGTAGCTAAGATTGGCAGTTGACTCTGGAATGGGACTGAATACTGATTTTAGAAACTGGAGAGGTTTACTTTACTAAAGGCAAGACCATTTCCAGTCATGCCCAGATGCTGGTCTCATTAAAACTGAAGTCCTGCACATTTCGATCGTTAAATAAGAATTTCAATGATGTGTGAAAGTACATTTTGCAGTCTATCAAATGTCAGTTAAGATCCTCGACTTCTaggcagattaaaaaaaaaaagtttctttaAAATCGGCTATATTAAAAGTACTTGCTTTCCCCAGTCGATTCTGCCCTCGATTTcgaatttcaaaattaaaaatcaagaGTCTCAGAGTGTTTCTAATGGAATAGGTTCTGCGCAGGAATTTACTGCTGTACATTGATCACACACACTAGTATTAATTGGTGTGATCTGTAACCTCCCCAACCCATCCCCTGTACTTCAGTTCCCCTGGCATGATAATGAAAAGACCATTCTGCAGCCCTGCTCCTTTCACATAGTAGTTTACTCGGGGGATACAGTGAGACAGCAGgcttattaaaaaagaaaagaaaaaaagaaatccacaaGTTCAGCAGGAggatgcccccccacccctctttcTTTAGGAAATTCATTTCCAGCCATTAAACCCAAGTTGGGTTCCATCTCAGGTAGAGCAAACGCTACAGAATAGGAGACAGTTGCTGCAATTCAAGGCAAGTTTCAATTGTTTatgatcaataaaaacaatctggaAACAAAACCCTTCTACACCTATAGCTAGATCCAAACGCCAGATGCATGATTAAGCCCCACATGGTCAGAATTTACTGAATTGGATTTACTCCCAGAAGGACCAAACTCACAAATACTGGTTTGAAAAATGCCAGTAAAGTGTACTTCTTGGTTTACTGCCAATGCCTGAATTGTAaccataaaaatgtatacttttatgGACAAAAACATATCGATTTGCAAGTGCTAGCATAAATCTGAGTGTCAGCATCCACAAAATACGCAGATTGGTTTCTGTCAAATTACTAAATGTACAACAAAAAGTAACACTAATTATGacaataatattgtattgtaaccaACCAGGAGCCAAAACTAATGTATTTTCAGATAAAAAGAACACTTGTGGCTTAAATACTGTTAACTATGGAAATaaccttttaataaaataaattaagtagtGCGAGACCTCAAAGTCACTTCGGAGAAGCCAATGTTTGCTATGGCCTAGTGTCGAACATCCAGCATTTCTCTATAGTAACAGCAGACAAACCCTGctgaatacagaaaaatatgGTGATCCTACCTTCCAGGTCATCGATGGTTTTTTCCAGTTTGGCCACTGACCTCTCTGCAAACTCAGCACGGGTCTCCCTCTTTCAGCTTGTCACTGAGAACCTTGATTTCCTCTTCATACTTGTCCTCCTTTTCGGAGTATTCTCAGACTGGGCTTCTAGAGACTTGAGGTTGTTGGTGACGTTTTTCAATTCTTCTTCCAGGTCACTACATTTACTGTGAATACATGCGGTCAGACAGGTTTACAACATTGGAGAGAAAGGTTTTTGGGAAGGAAAGCTGCATGCACATCTGAGTCCTAGTAAACCTTATCTCCAGTTCAATTAAAAACCAAAGGAGCtctattttttgtaaataaaagaaaaatccattttgacacatttcagaaatgcataACAACAACTTACAGCTCCGAAACCTCAGCTCGCTCCTCAGCTCTCTCCAGCTCGCCCTCAAGAATCACCAGCTTACGCCACCTCCTCGTATTTGCGGTCGGCCTCTTCAGCGATGTGCTTGGCCTCCTTCAGCTGCATCTCCTGGATTTCCATCTTCTCTTCGTCCTTCATCGCCCGGTTCTCAATCACCTTCTCAGCCTCCTCCAGTTTCAGCAGGGCGGTGGCGAGCCTCTCCTGGGCACGGTCCAACTCCTCTTCCACCAGCTGGATGCGGCGGTTCAGCCCAGCAACATCTCCCTCTGCCT

Function

symbol description
tpm4 Predicted to enable actin filament binding activity; protein heterodimerization activity; and protein homodimerization activity. Involved in osteoblast differentiation. Located in stress fiber.

NR:

description
PREDICTED: tropomyosin alpha-4 chain isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196137 True 3027 lncRNA 0.41 5 14318979 14323114

Neighbor

gene id symbol gene type direction distance location
AMCG00006014 NA coding downstream 46970 14264388 ~ 14272009 (-)
AMCG00006012 NA coding downstream 62241 14249791 ~ 14256738 (-)
AMCG00005996 LOC106613681 coding downstream 120065 14187248 ~ 14198914 (-)
AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding downstream 139859 14173845 ~ 14179120 (-)
AMCG00005999 NA coding downstream 182368 14092900 ~ 14136611 (-)
AMCG00006015 cib3,LOC107687907 coding upstream 47295 14370409 ~ 14374943 (-)
AMCG00006028 NA coding upstream 60556 14383670 ~ 14391108 (-)
AMCG00006029 NA coding upstream 70340 14393454 ~ 14401173 (-)
AMCG00006027 NA coding upstream 118796 14441910 ~ 14445493 (-)
AMCG00006026 NA coding upstream 129904 14453018 ~ 14458341 (-)
G155701 NA non-coding downstream 13282 14300475 ~ 14305697 (-)
G155655 NA non-coding downstream 152575 14166179 ~ 14166404 (-)
G155652 NA non-coding downstream 226522 14089336 ~ 14092457 (-)
G155593 NA non-coding downstream 434351 13883591 ~ 13884628 (-)
G155591 NA non-coding downstream 437809 13876723 ~ 13881170 (-)
G155717 NA non-coding upstream 46647 14369761 ~ 14370182 (-)
G155754 NA non-coding upstream 99390 14422504 ~ 14424746 (-)
G155768 NA non-coding upstream 166176 14489290 ~ 14491929 (-)
G155783 NA non-coding upstream 246448 14569562 ~ 14569836 (-)
G155899 NA non-coding upstream 657270 14980384 ~ 14981621 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 147372 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 620445 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 735628 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 1162661 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 1267260 13036424 ~ 13051719 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 13777 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 186119 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 356683 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 459392 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 675386 14998500 ~ 15007979 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location