G155754


Basic Information

Item Value
gene id G155754
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14422504 ~ 14424746 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU196199
TCACAGGGTAATTcacaaaagttaattttattttatatgtatacaaaatatattttgccacagaaaagataaaaaaagcttccaaaaacaaaagctgcacCATGGTGGCTCAATAATAGCAGGCACTTGAAATCATTCACAAGCCATTCATCGAGCTGCAGTGGTTCCAATTACAATACGTCTCACACAAACATTCTTCCAAAACATCACACACTGTTTGAAATGACACAAGTTCAATAGTTGTATATCACAGACATTCATTTCAAAGAGTAGCAATAAACTCATAACAGGTTTTTCACATTCTGtccatttacattgttttttgctttgtcagTACAAGATTGCAAATAGTAAtagtctatatatttatttacatacagatTTTAATGTAGCAAGTGCGCTTAAACCCATCTGCCCCAACAACAATTGATTATAGATTAGCTGCCAACTTTTAAAAGCTTCCAATAAAGCACAGTAAATCCATAAAATGTACTTGCAGTACTTGTAAGCTATTCATACATTCAAGATGAGTATTGTCCTGCGTGTGTGTGATTAATTTACTATTTCCTTATTACTgatttatattactttatatCACAAGCAAAGACATTTTAAGATTGATTTCCAGAGATTTAAGAATTGGCGTGAATGCTGGACAAATGGATTTATTAAGTGGCAATCCATACATAATCAGCAACTTTATTGACCAGTTATACTTGGTCCGATAAACCAATAAAAGTACTTTGGTGTTGGGTGATAATGCAATATCAGACTCACTGGATCAATATAAATTACGTACTAGTTCAACACCATGGAAAATGGAGCATTGCtatccaaccctggtcctgctcAGGTATAATGAATGTACAGTTTAGTAAAGATGGCAATCATTTTGACTAAAGCAGTAATGGATTTGATTttggaatatttgtttttcataactaGCAGCCCATAATCACGGGTCTAACAGGTCTAAATCTGCAGGAGTACTGAAAACTGCATTAACCCCTTAAAGCACCCACCAGAGTTCAGTCTGTTTCCCATTTAAATTggacacaaacaaagaaaataagaaaatagatATTTGAAAACTAATATACACTTCATTCAAGCTGAAATAGTTTCACATTCAGGATACATGTGGACAAATGCAAGCATACTTTTTCTCCAAAGCTTGGAAAGACCCTTTTTCAGATATAGATGAATATATGTTTAGTGTgtatgcaacaaaacaaaattgtatgCAAGATGTATCTGCCCTTCTAGACAAGGACCTTGTATGATTCAGATGCTTTGTAATTGTCTGGATTATCCATTGTGCTGGGCTGGTTACCTCAGCATGGCGGATCGCTGAGTGGCGACCAGGTGTATTGACTCTGGAGAAGAAGTTCAAAGTGGGTCAGTTACTCTCAGTACAATCACTATTGCTGCCAGGAAACATTGCTGAAATAATACTTGGAGAAAGGGACCATACAGGCTCCTACTTCCGCCATTCTATAAGTTTCCGGATTTGAcctTTTTTCTCCTTATTTGCCCTCTTAAGTCgattaattaacatatttgtCCAATGGATTTTGGGGTCTGCACAGAAAACCTTTCCATTATTCCGGATAAACCTGTTAAAGATACAAGAAAAGAGAAGATTATATGGAATCATGCTGTTCCCAATTCAgtcttgtttttctattttgcaTATGGCAACCAGAGTTTCAGGTTTCATAAACTTGTTTCCCTGATGCAAACTCAAGAAGCCTATTTGTTCATTTTGGAGAAAGAGACCCTTTTCAAATTGCCATGAAAACCCAATATTGAAAGAtcatatacatttcattaatttaaatgtgagcAACTGTGGCTTCTCTTTGGATACATACACAATGGCTCGAATATTGCAGGACCCATCCGTTTCCTGTATACGGTAAGCAGTCACAGTCTTGCGGAGGTGTCTGGGCACATTCCTTACGTATTTCAGACAGCAATTCTCATAGGAACCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196199 True 1995 lncRNA 0.36 2 14422504 14424746

Neighbor

gene id symbol gene type direction distance location
AMCG00006029 NA coding downstream 21331 14393454 ~ 14401173 (-)
AMCG00006028 NA coding downstream 31396 14383670 ~ 14391108 (-)
AMCG00006015 cib3,LOC107687907 coding downstream 47561 14370409 ~ 14374943 (-)
AMCG00006014 NA coding downstream 150495 14264388 ~ 14272009 (-)
AMCG00006012 NA coding downstream 165766 14249791 ~ 14256738 (-)
AMCG00006027 NA coding upstream 17164 14441910 ~ 14445493 (-)
AMCG00006026 NA coding upstream 28272 14453018 ~ 14458341 (-)
AMCG00006018 slc1a6,LOC108437295,LOC105011479,LOC108230844,LOC107747749,LOC106613701,LOC107757933 coding upstream 67259 14492005 ~ 14507388 (-)
AMCG00006020 NA coding upstream 121434 14546180 ~ 14546493 (-)
AMCG00006019 NA coding upstream 122198 14546944 ~ 14549687 (-)
G155717 NA non-coding downstream 52322 14369761 ~ 14370182 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 99390 14318979 ~ 14323114 (-)
G155701 NA non-coding downstream 116807 14300475 ~ 14305697 (-)
G155655 NA non-coding downstream 256100 14166179 ~ 14166404 (-)
G155652 NA non-coding downstream 330047 14089336 ~ 14092457 (-)
G155768 NA non-coding upstream 64544 14489290 ~ 14491929 (-)
G155783 NA non-coding upstream 144816 14569562 ~ 14569836 (-)
G155899 NA non-coding upstream 555638 14980384 ~ 14981621 (-)
G155957 NA non-coding upstream 675563 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 754305 15179051 ~ 15217634 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 80901 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 250897 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 723970 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 839153 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 1266186 13123557 ~ 13156318 (-)
G155770 LOC103376870 other upstream 84487 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 255051 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 357760 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 573754 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 1008686 15433432 ~ 15491642 (-)

Expression


Co-expression Network