G155913


Basic Information

Item Value
gene id G155913
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15050855 ~ 15055957 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU196383
ctctctcctctctcaagGTTCTCTGTCCCATACACTGtagaaatgaacacaaaacaacaacatgcttctttgatcattttattttagggaGAACAATTTCAAATCAGTCACCCATTCATTCCCATAGTCAGACTGATTGCACCGAGGTTGAAAtcttgatacatttatttagaataaatacataaatacagcaattTTAAGGATTGTGCAAGGACAGAAAATGTAAGACTTTAAAACATTGTGGTTGAAAAGCTTATTTCCCTTTTACCAGTATGcacaatcagtacaaaacatGCCTTCAGTTTCTGAATAGTTGTATTTGACTGCATATATTGAAGGATTCTTTAATTCAAGATTGGCTAGTGTTGCATAGTTTGAACAACAAAGGTAACGTCAGTAAAATCAAAGAATCTGGAGAACAGAGATCAGACACACCTTTAATACCAGGTTGGTACCATGTGCTCTGCTTTGTAGTTCAGAATTATTGCCCGAGGTTCGGGATGTCTCCACATTTCATAAGTGCAGTGTGCAAGGCAAAGAGAttggaaaatctgaaaatatattataccTACCTCATTACTGCTTATCCACAGTGAACGAGGGGAtaccaaaaaatacattcaattcatTACATTGTCAGCAAAAACACCCTGAGAGGCTTGGTCACATCTTATAAAGACAAATCAAGACAACAGTTACCATTGATCCAACTGCAGTTGCAGTCCCCCTAGCATTATATATAGGAGTATATAGttacaacacaattacaaataagaattataataatgattaccTTGGCAGGCAAATGATTCAGGATAGGAAGGGCAGGAAGCATGTTAGGCTATGGAATTGCTGAGCAGACCGAGGATGGGAAGTTAAAAATTGGAAAGAGGCAATATGCTTGTTTCAGTGAcctttgagaaagaaaaacaaattcactgCCTTTTGTCACTTtgagacattttcaaatgtaacagAGGATAAGGTTTTAGGAACCCAGATATCTCTGTACCACGACCTCACCAGTTGTACAGGGCCTGACGTCCAGTTAGAAATTACTGGATTAGGTGATATCACTCAACGacaatattaactttcacaatTACGCAGACagcacacaattatatttgtcagtaaaccctaacaataccatagacatagAAAGACTAATCTGTTGTCTGtccgagattaaaacatggatgacaagtcattttcttatgcttaattctgataaaacagaagtcctaattttacgGGACAAAAATCCATCTGTTCAtcacacactgacaaaactgagtaatgacaACTTTAATTTCTCGCCTAAGGAGATTGCACagaacctgggtgtcatctgtgaccaTAATCCTGTGAATCACACAGaatcagaatgtgtcgagatcttccttcctccagctcagaaacattgctagacaattctaagacaattcctctcattacacgATATTTAGAAATTGATACACACacttgttacatctagattggattactctaatgcaggggttcccaatgtttggtgatggagggccaatttccggaggttgcatgggatggggggggccaagtagaaaatgaaccactgatgaaaacaaaatgtcccactatataaatatagtaaatgttcagaaaaggggtggttgaaggtggGCTTTGGGGGGCTGCACCAATCATCCTTGAGAGCCACATTTGGCCACCGGGCCGCACTTTAGGAACCCCTGCTCTAATGcaattctgtcaggcagcacaaatcAAGCtgtttctgcacttcagttattCAAATCAgaattctaattaaaacaaaaacacatgatcacagcactccagtattggcttctcttcgcTGGCCGCCCGTGCACTATAGGACAGACTTTTAAgttctcttattaacatttaaaatactaaagggactggcacctccctacttaaaagaccTCCTTAtcaaatacactccaggtcagccattgagatcccagtttctgtttttctagcccatagtgccgccgctgtgccatggacatgcaatgcacaattgtatttggagatgtcctgcactgcatgaccagtatctgagcacacctgtctttttgtcttccagcaacagccccctctgagggtgcgatgaggcacctcgtcccccaccgtCGAAGCCCgacgaggcacaacccaccTCAGAGGACCCCCACCACGGAGGGCTAACGGTacacccacaccccaaggtctgacgagctatttttcttttcccccgtgcctaaatggtttatttaaatgttaatttactttattttagatcatttaaactgttagaggtctatttttattttactttattgtattatgtatgtattcttttattCTGCTGTATAtctgttgtatgtttaccactctgtaaagcactctgtggctaccttgcgaagggtgctatacaaataaaaattgaaccGAATTGAAAACCTTTCAAGTAGGTGGGAAGACGGGGTTTCCGTCCAACTGTGgtgtgaataaaatattacGATTCCCGCCCCCCCGCCGGAGTATGATGGTTAGTCTTGGCAATGCTATACAAACTGTCATATTAGAAATGGAGgccaaaaaacacaatcatggAGGGAATAAACCATCTCATTCTGAAACAAAGCAATTGCATGGATTTCCTGAAGATGACTGGAGACAAACATGTCCAATGCAGCTAAAACAGTCTCCCAATAAGCTGCAAAGGCTAAATTCTTTTGAGGGTTTTAAAGGCGGCATGTACCTccgatttattaatttattccttAATTGAGGGTAGTGTGGTGATGCAAAGTCCAACATCAAACAAGTCAACAATGAACAACAGCAACAGTTAATTGCATAGTGTAGGAGCAAAATCCTCCTGCTGTAGACAAATACGAAGCACTGAAAAATCACCAATTTATTTAGTAGAATGTTGTTCCAGTGCCTTTACCAAATTTGCCAACAGCAGGATTGAAAAAGTCATATGACAACAGGCATTTAATATTACAggtcacaggaaaaaaaaaaaaaaagatttaaaaaaagttggGACAACAAATGAGTGTGTACTggctttatgtatttatagattCTTTCTTTTACCAACAATAAAGCTTAACACATTCCCCTCCCCCAATTGAGGCAAAACAGGAAGACCTTAGTAACTGCTGGTGACACTTTTCTGGCATGGCTTGAATTAACAGCTTCCTCACAACGCCAGCCtcagcaaaacagaaatgtaggCTCTCGGCTTccaagcaacaaaacaaaaacccacaaacaaatacagaatgtcTTGGGCAACATGACCACGTGTCAGGCTCAGAGACACAGAGTCAGGAAAGTGGGTCACAGTGCAGCCCATATCTCATCTGGAAAACTTGTCTTTTGGAGAGGTCCATACTAGTTTGCTGGGTGGAAAGTGCTAAAGATGCTTCGATGCAAAAATGCCACATTTGAGCCCGGGCTCATGGACACCTTGCCACATGACTAAGATTTCATACGGCAGGAACCGGTGCACCAACAGAATCTCCCGGTAATAACAGGGGTCATAAGAGTCAAACTTTTGAGAGGGCACGTGTAGCCCTGCGGTACGAACCCCGGCGTGTGACTCGGGGCGTAGGCCGGCCTTTTGCAGGCACATACCCATGTAAACATCATCAATGGGCAGGAGGGGAATAGAGAAGGACATGTTGTAGATAGTCCTAGCAGTATACCTAGAGAGAAGGAAGCCCCCTCCACCACAGTACGGAGGATACGAGTTGGATTCCTGGACTTGAACCGGGATGTAGTACTTGCTGCCAGATTCCCGGATGGGGCCCACGTATTGGATGAGGTGGCCCGCAAAGAGGTGTTTGCTCCCGTCGTTGCCCTCCAAGCCCTGCAAGTACTGTATCATATTGTCGGTGTTGGCGAAGATGTCGTCATCACCGTTGAGCAGGAAGTGGACTTCGGGACACCGGGCTTCCATCCATTCCAGGAAGAGGAGCTGTTTGAGAGTGAGGTTGTAGAACGTGTCGTCGAAGTCCCACTGTACGATGTCCTGGTACTCGCGGTGCTCGATCTCTAGGAGGCGGTTCAGCTTGCGCCTCTCCCGGTTGTTGCCTACCACCCCCGCCACGAAGAGGCGGCGCACCCACACGCCGTCCTGCAGCCGCTCCTTCCCCCACGTCTTCCGGATCACTTCACGGCGGTCATAGTTCCCCGGAGAGGTCTTGATCACCAGCAGCAGGAAGACATCCACCGAATCCTCTGGCGTCTTTCCGCACTTCTCGGGAACGTCCAGGATAATGGGAAACTCGCGGCAGTGGCGGTACCACAAGAAGTTCTTGATGTTCTCTGGGAGGGTGGCGAAACCAGAGATGTTGGCGGCAGTGGCGTTCACCTCACACGGAGACGGTGGTTTCAAAGGCAGCTGGAATCTGACGGTTTCGGGGAGCGGTGCAGCCGTGACTAGAGTGGTTCGTCTGCCTACAATCAGCTCCCCGGTAAGGTCCTCTCTGTAAAAGAACACTAGGAACAAGGTGGCGACCACAAGCAGCAGAGCTGTCTCCAAATAGCGAGCTCTCCATCTCATCTCTGCACCTGGGGGTGGAAAAATAACCGTCAGCACTGAGGATACATGTTTCAAAAGAGCAAAGAGAACCATGTTCCCACTGCACTGCCTGCTAGTTATCACACTTAATGAACAGGTTATGAAGTCTCCCTGGGTTTTGTTTATCAAAACACACTTTAGCCTATTGGTAAGCGTGGCCATTGCATGAAACGATGTTCCATTCATGTTTGCTGGTTTCTGTGCTAGTGTGTAAACTAGTTACTTGTGTCATGTTCCAAACTGTTAAATTCACTGCTTTGAAAAGGCACACCGCTTTGGATTAGGTGAAGAGActgcaagagaaaaaacaaatcagcaaaTTACCAGAGCAGAGAGCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196383 True 4946 lncRNA 0.44 2 15050855 15055957

Neighbor

gene id symbol gene type direction distance location
AMCG00006030 NA coding upstream 8928 15018786 ~ 15041927 (+)
AMCG00006031 NA coding upstream 59497 14990894 ~ 14991358 (+)
AMCG00006040 nr2f6,LOC108238456,LOC103359430,LOC101171737 coding upstream 202717 14838689 ~ 14848138 (+)
AMCG00006041 NA coding upstream 223328 14819668 ~ 14827527 (+)
AMCG00006042 NA coding upstream 252000 14796612 ~ 14798855 (+)
AMCG00006093 NA coding downstream 36060 15092017 ~ 15096837 (+)
AMCG00006091 NA coding downstream 92981 15148938 ~ 15156505 (+)
AMCG00006090 NA coding downstream 126007 15181964 ~ 15185213 (+)
AMCG00006070 LOC107661085,LOC108271288 coding downstream 132267 15188224 ~ 15196741 (+)
AMCG00006071 cnn2,LOC107688471,LOC107585101,LOC107550622,LOC107709904,LOC107680261 coding downstream 148897 15204854 ~ 15215919 (+)
G155898 NA non-coding upstream 69235 14981101 ~ 14981620 (+)
G155897 NA non-coding upstream 70365 14979305 ~ 14980490 (+)
G155856 NA non-coding upstream 184376 14865914 ~ 14866479 (+)
G155832 NA non-coding upstream 289127 14760397 ~ 14761728 (+)
G155790 rpl36,LOC107678109,LOC107741803,LOC107744644 non-coding upstream 367853 14628442 ~ 14683002 (+)
G155929 NA non-coding downstream 44363 15100320 ~ 15103379 (+)
G155931 NA non-coding downstream 49638 15105595 ~ 15106403 (+)
G155933 NA non-coding downstream 52037 15107994 ~ 15109196 (+)
G155934 NA non-coding downstream 53636 15109593 ~ 15111175 (+)
G155974 NA non-coding downstream 129917 15185874 ~ 15187225 (+)
AMCG00006034 vmac,LOC106573562 other upstream 391358 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 626109 14420382 ~ 14424746 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 667275 14375995 ~ 14383580 (+)
G155638 NA other upstream 940985 14108173 ~ 14109870 (+)
G155637 eps15l1,LOC107592720 other upstream 952159 14097804 ~ 14098696 (+)
AMCG00006092 rps28 other downstream 47499 15103456 ~ 15105567 (+)
G155932 NA other downstream 51252 15107209 ~ 15107734 (+)
AMCG00006065 lsm4,LOC106613629 other downstream 522127 15578084 ~ 15584761 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 908476 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 976935 16032892 ~ 16035969 (+)

Expression


Co-expression Network