G155929


Basic Information

Item Value
gene id G155929
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15100320 ~ 15103379 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU196399
atataatactttttattaatttactggattcatgttttactttataCAGAACAATACAGACAAGGGACTGGGCCCTAAAGTTTAGGCTGTGGCtctttttaattacagcagCAGTGAGCACCTAGTGCAGGTGGAGATGTGAACGGCAGTGGTTTACTGTCATAAACCAGCAGGACTATTACACcccccctcaccctctctctcagagGTATGGCTGGTCTGTAGACAGCTGCAGGTCCCTCGCTGGAGGTCCGGGCACCACTGGAAGCTTGGCAGGTACAGCTGGAACTTCACGCCAGGTGCCAGTGCTTTCTGGGACGACATCACAATCGTTGGAGGGGCCGCTTCCCGTCGCCCATCTCGTAGGcagtaataattaaaagcaaacttGTGGCTGGGCCCTACTGGGAGATTAGGTGGGGGCTGAGTCCTATGGCGATCTCAGTGTAACGAAGTTGAAGCTTAGCTTGGAGATCGTGCTGcagaaaaacaattcaaaacaacTGAATATAATCAGACAATCAtgcacaacaatattaataacatgaaCATCAACAAATGTTAAGCACCGAGTCAGTCGCACATACTCCTGTACTTCTGAAGGCATAAATCAAATGTTGCACCATACAATAACCATTCGTGTATACAGACACTGTACAATAATATTAACCCTATTTGGTTTCACATTAGCAAGTGTACAGAATAATAATAGCTTCTCAATGTCTTCACTATGCGCCTGTCTGTGACTTACTCAGGGCTACCATCGTCCCCAAGTTCATCAGAGACAAGCAGCTGCTAAACATAATCATTATATACGTTTCCCCATGACTATACCAAAACATGCACGttatatattcaaatcaaaaataaaataaacgttgACTTGTTTTTACCCCCGAAAAGAAGTTCCTAATTCTTCGTATAATCTTGGTTGCGGACGCCATTGTTGTTGTCAAGGGCAGACCCTCCGGGTACCATGAGAAAACCTggcacttttatttatttattttatttaacgtTTTCTCTTCAGACTTCTGCTTACACAATGTATGTGATCACCAATTCTTAATTATCTTAACCCGAAaagttataatttaatttaaattaaagtcttTCCCACAGGGATGCGGAAGTGG
>TU196400
atataatactttttattaatttactggattcatgttttactttataCAGAACAATACAGACAAGGGACTGGGCCCTAAAGTTTAGGCTGTGGCtctttttaattacagcagCAGTGAGCACCTAGTGCAGGTGGAGATGTGAACGGCAGTGGTTTACTGTCATAAACCAGCAGGACTATTACACcccccctcaccctctctctcagagGTATGGCTGGTCTGTAGACAGCTGCAGGTCCCTCGCTGGAGGTCCGGGCACCACTGGAAGCTTGGCAGGTACAGCTGGAACTTCACtgAGGTGCCAGTGCTTTCTGGGACGACATCACAATCGTTGGAGGGGCCGCTTCCCGTCGCCCATCTCGTAGGcagtaataattaaaagcaaacttGTGGCTGGGCCCTACTGGGAGATTAGGTGGGGGCTGAGTCCTATGGCGATCTCAGTGTAACGAAGTTGAAGCTTAGCTTGGAGATCGTGCTGcagaaaaacaattcaaaacaacTGAATATAATCAGACAATCAtgcacaacaatattaataacatgaaCATCAACAAATGTTAAGCACCGAGTCAGTCGCACATACTCCTGTACTTCTGAAGGCATAAATCAAATGTTGCACCATACAATAACCATTCGTGTATACAGACACTGTACAATAATATTAACCCTATTTGGTTTCACATTAGCAAGTGTACAGAATAATAATAGCTTCTCAATGTCTTCACTATGCGCCTGTCTGTGACTTACTCAGGGCTACCATCGTCCCCAAGTTCATCAGAGACAAGCAGCTGCTAAACATAATCATTATATACGTTTCCCCATGACTATACCAAAACATGCACGttatatattcaaatcaaaaataaaataaacgttgACTTGTTTTTACCCCCGAAAAGAAGTTCCTAATTCTTCGTATAATCTTGGTTGCGGACGCCATTGTTGTTGTCAAGGGCAGACCCTCCGGGTACCATGAGAAAACCTggcacttttatttatttattttatttaacgtTTTCTCTTCAGACTTCTGCTTACACAATGTATGTGATCACCAATTCTTAATTATCTTAACCCGAAaagttataatttaatttaaattaaagtcttTCCCACAGGGATGCGGAAGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196399 True 1136 lncRNA 0.42 3 15100320 15103379
TU196400 False 1135 lncRNA 0.42 3 15100320 15103379

Neighbor

gene id symbol gene type direction distance location
AMCG00006093 NA coding upstream 3483 15092017 ~ 15096837 (+)
AMCG00006030 NA coding upstream 58393 15018786 ~ 15041927 (+)
AMCG00006031 NA coding upstream 108962 14990894 ~ 14991358 (+)
AMCG00006040 nr2f6,LOC108238456,LOC103359430,LOC101171737 coding upstream 252182 14838689 ~ 14848138 (+)
AMCG00006041 NA coding upstream 272793 14819668 ~ 14827527 (+)
AMCG00006091 NA coding downstream 45559 15148938 ~ 15156505 (+)
AMCG00006090 NA coding downstream 78585 15181964 ~ 15185213 (+)
AMCG00006070 LOC107661085,LOC108271288 coding downstream 84845 15188224 ~ 15196741 (+)
AMCG00006071 cnn2,LOC107688471,LOC107585101,LOC107550622,LOC107709904,LOC107680261 coding downstream 101475 15204854 ~ 15215919 (+)
AMCG00006072 NA coding downstream 126586 15229965 ~ 15271081 (+)
G155913 NA non-coding upstream 44363 15050855 ~ 15055957 (+)
G155898 NA non-coding upstream 118700 14981101 ~ 14981620 (+)
G155897 NA non-coding upstream 119830 14979305 ~ 14980490 (+)
G155856 NA non-coding upstream 233841 14865914 ~ 14866479 (+)
G155832 NA non-coding upstream 338592 14760397 ~ 14761728 (+)
G155931 NA non-coding downstream 2216 15105595 ~ 15106403 (+)
G155933 NA non-coding downstream 4615 15107994 ~ 15109196 (+)
G155934 NA non-coding downstream 6214 15109593 ~ 15111175 (+)
G155974 NA non-coding downstream 82495 15185874 ~ 15187225 (+)
G156042 NA non-coding downstream 327097 15430476 ~ 15431939 (+)
AMCG00006034 vmac,LOC106573562 other upstream 440823 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 675574 14420382 ~ 14424746 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 716740 14375995 ~ 14383580 (+)
G155638 NA other upstream 990450 14108173 ~ 14109870 (+)
G155637 eps15l1,LOC107592720 other upstream 1001624 14097804 ~ 14098696 (+)
AMCG00006092 rps28 other downstream 77 15103456 ~ 15105567 (+)
G155932 NA other downstream 3830 15107209 ~ 15107734 (+)
AMCG00006065 lsm4,LOC106613629 other downstream 474705 15578084 ~ 15584761 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 861054 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 929513 16032892 ~ 16035969 (+)

Expression


Co-expression Network