G155957


Basic Information

Item Value
gene id G155957
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15100309 ~ 15105533 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU196434
CTTCATGGAAATCcaaatacatattcagaaataaacaatgacaATTAATTGCCAATCCAACCTTTATTGTCAAACTGTACACATCGTGCTTTTAACACTGCTTTACAAAAATCAGTGTCCATACTCCACAACAGTGGTCTTCAATGTGGGCGTGTCTTCCATCTTCACAAGGGACTCTAGCGCAGCCTCCTTGCTTCTCTTTCGGACTCCAGCAGGGTGAGCACATCGCCCTCTCTGACTGGGCCCTTCACGTTGCGGATGATGGATCGGTTGCTGTCGTCCATGAACTCGACACGCACCTGGAAACGGAGGAGAAGCGTCTCATTGCACCCAAGGAAACCCATGTAACAGTGCTGTCAGAGCAATCCACTGAAAGGAAACTGAATTATCCCATGCTTTAAAGATCAATCAAATACAACCATTTATTCCAGAAACGTTTGACAGACTGGGTCACACCCAAGTATCTTCCTCAGCGTTCATCTTAAATACCTGGCTTTAGGctaaattaatataatctataagAAATAACCCTGATATGAGCACTAGGACCAGGGGGTAACGCATTGCCAAGCTGAAGATATCAATTGTATAGCCTGGTATACACCGTGGGCACCGACATGGGTATTTGCTCATTCCTTCTTTAAAAGCCCAAAGAACAGCATCTGAGGACAGCACGATCTCCAAGCTAAGCTTCAACTTCGTTACACTGAGATCGCTAAAAGGACTCAGCCCCCACCTAATCTCCCAGTAGGGCCCAGCCACaagtttgcttttaattattactgCCTACGAGATGGGCGACGGGAAGCGGCCCCTCCAACGATTGTGATGTCGTCCCAGAAAGCACTGGCACCTGGCAGTGAAGTTCCAGCTGTACCTGCCAAGCTTCCAGTGGTGCCCGGACCTCCAGCGAGGGACCTGCAGCTGTCTACAGACCAGCCATACctctgagagagagggtgaggggggGTGTAATAGTCCTGCTGGTTTATGACAGTAAACCACTGCCGTTCACATCTCCACCTGCACTAGGTGCTCACTGctgctgtaattaaaaagaGCCACAGCCTAAACTTTAGGGCCCAGTCCCTTGTCTGTATTGTTCTGtataaagtaaaacatgaatccagtaaattaataaaaagtattatatatGTCATGGAA

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU196434 True 1164 lncRNA 0.46 5 15100309 15105533

Neighbor

gene id symbol gene type direction distance location
AMCG00006100 NA coding downstream 11401 15080401 ~ 15088908 (-)
AMCG00006098 NA coding downstream 22541 15074200 ~ 15077768 (-)
AMCG00006097 NA coding downstream 39548 15050921 ~ 15060761 (-)
AMCG00006095 NA coding downstream 55818 15042183 ~ 15044491 (-)
AMCG00006103 NA coding downstream 68506 15030987 ~ 15031803 (-)
AMCG00006101 LOC106573875 coding upstream 55788 15161321 ~ 15181317 (-)
AMCG00006080 NA coding upstream 272689 15378222 ~ 15390581 (-)
AMCG00006081 gamt,LOC107747770,LOC107597217,LOC107685360,LOC107553529,LOC107757934 coding upstream 291719 15397252 ~ 15400964 (-)
AMCG00006079 arrdc2,LOC106573914 coding upstream 363708 15469241 ~ 15480318 (-)
AMCG00006082 NA coding upstream 377629 15483162 ~ 15488681 (-)
G155899 NA non-coding downstream 118688 14980384 ~ 14981621 (-)
G155783 NA non-coding downstream 530473 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 608380 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 675563 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 730127 14369761 ~ 14370182 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 73518 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 99336 15204869 ~ 15212286 (-)
G156003 NA non-coding upstream 101987 15207520 ~ 15318177 (-)
G156014 NA non-coding upstream 167280 15272813 ~ 15330546 (-)
G156028 NA non-coding upstream 260571 15366104 ~ 15367641 (-)
AMCG00006102 slc5a5 other downstream 92330 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 316029 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 417329 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 590695 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 758706 14336891 ~ 14341603 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 327899 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 848543 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1348751 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1399831 16505364 ~ 16521689 (-)
G156341 NA other upstream 1546007 16651540 ~ 16680772 (-)

Expression


Co-expression Network