G155989 (LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101)
Chromosome Information
Item |
Value |
chromosome id |
CM030142.1 |
NCBI id |
CM030142.1
|
chromosome length |
21087710 |
location |
15179051 ~ 15217634 (-) |
genome version |
AmiCal1_2021_bowfin_Genome |
Sequence
>TU196476
GTtcatatatacaaaacatttattacatgCATTACAGTTTGCTCCCCgtcttccctccccctcttgTGCAATCAATGTCCACTGCaagctttcaattaaaatattcaaattaaaaaaaaagcatcaggAACATTTAAAGATTGATGACATAACTAATTTCCCTCTGAGGCAGATCTGCACAGGCCCAGTCCTGCTGCAATTAAAAGACTAAAGGCAATTTCTCAAATCTGGTGCAATCTAAAACCCAAAGATGCGGTTGCCCACTAAGACTGGATTTCTGCATGCCTGCCTATTTGGAATCTgagcagaataaaaacaaaactccaaGAGGAAACCAGTTACAAGGATCAAAAGAGTTCACATTATTCCTGGGCCTGCCTGGCCCATCCTCCATCCGTTTCTCATTCTGTCTCTTCAAGCAACGTGGAAAGTAGAGAGTCTTAACAAAATAATCCAATCGATTCCAGTTCCGAGTGCGGAATGTGCGGAGCTTGGCTTTGGAATGTTCCGAGACGCACCGATCCAAGCAAAACAAGCGAGGCCCGGTTATCAAGGCAGTGACACTGGTTAAGCAAACAGTACACATGGCTATACaaggtgaaaatatatataaaaaaaaaggggaaatcaTACTCAAGAGGTATTAACAGTGGTAAAGTAGGTGAAAACCGTAAATTGAACATTGTCATGGCATCTTAACGCCAGGTTTTAAAAGAGTGGAATGTTGATCACGGAACAGAAACCTAACCTTCCATCCTACTAATGTGGGGTTTCCATAACCCTGTGTTTAATTAAGctttttccaacatttttaAGCTAATTGGTCCCTCATTAAGATCCATCAACACAAGAACATTTTGGAAGATGGATAGACCCAAGGTCGAGGGGATGGGATGGAGAGAGTGACCAGTCAAGAAGTACAAGTTCTAAGCAATTTAGTATGCACCTCTGCAGGTCATAtccacagattgtttttttttttttttttgttctgcgATTAAGATGGTCCTGCATGAAATGTTAGGCTGATGCACAGTAAGTCACTTGTAGTATCAATGGGAGCATCCCGGAGGATTGGTCACAGTCATAGCTTAGAAACTGTGCCACACTACATCAAAACAAGGGGAGGCTGTATATTGCAATTCAACCAGCAATCTCCATCTGCTCAGtgaaagtaatatttaaaaggcaaaatGTATAGATCTGCTAAAGAGAGaatagcacaaaataaaaatagtcccttatatataaaaaataaccagTTTAATAgcactttaaatttaaaaggtGATCAATATTGTCACTTTCATTGTAAgcgatttaaaaaaattatacaaattagcACAGCCTCAGTttgacaatataaaaatacttgaatTCTAGAGTTGGTTACCACACAAGGGGAAATGGCTGTGCTTCTTAAATTAGTATCACTGATACAAACCCTTACTTAAAACATTCATACTTAAAAAAGGGACCCCCTTGTTTCAAGATGCggtataaataaaattgaaaaacgAAAAAGTTCATCTGCAGGCAAGTTTTCATTGGGTCCCCTTTATCCCTGTAAACATCCCTGTAAGTCGCTGCATTCCTCATGTTTTCAAAGGACAGccaaggaggggggggggtttgggTGAGTGTCATGGGAAAAACTGTAGATCTTCCTGGGTTATGCACAACAGTATCGCATACGTCAACCGtgggatatatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaaaaaaaaaaaaaaaaaagtt
>TU196477
GTtcatatatacaaaacatttattacatgCATTACAGTTTGCTCCCCgtcttccctccccctcttgTGCAATCAATGTCCACTGCaagctttcaattaaaatattcaaattaaaaaaaaagcatcaggAACATTTAAAGATTGATGACATAACTAATTTCCCTCTGAGGCAGATCTGCACAGGCCCAGTCCTGCTGCAATTAAAAGACTAAAGGCAATTTCTCAAATCTGGTGCAATCTAAAACCCAAAGATGCGGTTGCCCACTAAGACTGGATTTCTGCATGCCTGCCTATTTGGAATCTgagcagaataaaaacaaaactccaaGAGGAAACCAGTTACAAGGATCAAAAGAGTTCACATTATTCCTGGGCCTGCCTGGCCCATCCTCCATCCGTTTCTCATTCTGTCTCTTCAAGCAACGTGGAAAGTAGAGAGTCTTAACAAAATAATCCAATCGATTCCAGTTCCGAGTGCGGAATGTGCGGAGCTTGGCTTTGGAATGTTCCGAGACGCACCGATCCAAGCAAAACAAGCGAGGCCCGGTTATCAAGGCAGTGACACTGGTTAAGCAAACAGTACACATGGCTATACaaggtgaaaatatatataaaaaaaaaggggaaatcaTACTCAAGAGGTATTAACAGTGGTAAAGTAGGTGAAAACCGTAAATTGAACATTGTCATGGCATCTTAACGCCAGGTTTTAAAAGAGTGGAATGTTGATCACGGAACAGAAACCTAACCTTCCATCCTACTAATGTGGGGTTTCCATAACCCTGTGTTTAATTAAGctttttccaacatttttaAGCTAATTGGTCCCTCATTAAGATCCATCAACACAAGAACATTTTGGAAGATGGATAGACCCAAGGTCGAGGGGATGGGATGGAGAGAGTGACCAGTCAAGAAGTACAAGTTCTAAGCAATTTAGTATGCACCTCTGCAGGTCATAtccacagattgtttttttttttttttttttttttttttttaa
>TU196478
GTtcatatatacaaaacatttattacatgCATTACAGTTTGCTCCCCgtcttccctccccctcttgTGCAATCAATGTCCACTGCaagctttcaattaaaatattcaaattaaaaaaaaagcatcaggAACATTTAAAGATTGATGACATAACTAATTTCCCTCTGAGGCAGATCTGCACAGGCCCAGTCCTGCTGCAATTAAAAGACTAAAGGCAATTTCTCAAATCTGGTGCAATCTAAAACCCAAAGATGCGGTTGCCCACTAAGACTGGATTTCTGCATGCCTGCCTATTTGGAATCTgagcagaataaaaacaaaactccaaGAGGAAACCAGTTACAAGGATCAAAAGAGTTCACATTATTCCTGGGCCTGCCTGGCCCATCCTCCATCCGTTTCTCATTCTGTCTCTTCAAGCAACGTGGAAAGTAGAGAGTCTTAACAAAATAATCCAATCGATTCCAGTTCCGAGTGCGGAATGTGCGGAGCTTGGCTTTGGAATGTTCCGAGACGCACCGATCCAAGCAAAACAAGCGAGGCCCGGTTATCAAGGCAGTGACACTGGTTAAGCAAACAGTACACATGGCTATACaaggtgaaaatatatataaaaaaaaaggggaaatcaTACTCAAGAGGTATTAACAGTGGTAAAGTAGGTGAAAACCGTAAATTGAACATTGTCATGGCATCTTAACGCCAGGTTTTAAAAGAGTGGAATGTTGATCACGGAACAGAAACCTAACCTTCCATCCTACTAATGTGGGGTTTCCATAACCCTGTGTTTAATTAAGctttttccaacatttttaAGCTAATTGGTCCCTCATTAAGATCCATCAACACAAGAACATTTTGGAAGATGGATAGACCCAAGGTCGAGGGGATGGGATGGAGAGAGTGACCAGTCAAGAAGTACAAGTTCTAAGCAATTTAGTATGCACCTCTGCAGGTCATAtccacagattgtttttttttttttttttgttctgcgATTAAGATGGTCCTGCATGAAATGTTAGGCTGATGCACAGTAAGTCACTTGTAGTATCAATGGGAGCATCCCGGAGGATTGGTCACAGTCATAGCTTAGAAACTGTGCCACACTACATCAAAACAAGGGGAGGCTGTATATTGCAATTCAACCAGCAATCTCCATCTGCTCAGtgaaagtaatatttaaaaggcaaaatGTATAGATCTGCTAAAGAGAGaatagcacaaaataaaaatagtcccttatatataaaaaataaccagTTTAATAgcactttaaatttaaaaggtGATCAATATTGTCACTTTCATTGTAAgcgatttaaaaaaattatacaaattagcACAGCCTCAGTttgacaatataaaaatacttgaatTCTAGAGTTGGTTACCACACAAGGGGAAATGGCTGTGCTTCTTAAATTAGTATCACTGATACAAACCCTTACTTAAAACATTCATACTTAAAAAAGGGACCCCCTTGTTTCAAGATGCggtataaataaaattgaaaaacgAAAAAGTTCATCTGCAGGCAAGTTTTCATTGGGTCCCCTTTATCCCTGTAAACATCCCTGTAAGTCGCTGCATTCCTCATGTTTTCAAAGGACAGccaaggaggggggggggtttgggTGAGTGTCATGGGAAAAACTGTAGATCTTCCTGGGTTATGCACAACAGTATCGCATACGTCAACCGtgggatatatttaaaaaaaaaaaaaaggaaaatggtaGGATGTTGCAGATACACGATTTGGAAAGACTCTAGCTGGTCCTCTTCTAGGGATTAAACAGTTTTGAAGCCAACCCCCCCcttaaaaaggaagaaaaaagccACCTGTGatcaaacaataaacacatactGTTCTTCATCTCACTGGGAGGGGCCACAATCTGGTTTCTGCCAGGACTGCAATGGATGCTGagagcctctctctctgtacagttTCCTCCTGCCTGGATGCTTGGCAAAGAGGCTGCTACGAGCTTCTTCACTGGTCAGAAAAACCCCTAAACAAGAACATCTCCTCAGAGAGGCACATCAAATTCCATTCTTCATCAAGTCTTCATTTCGGGAACAAACTACCAAGATAGGgggaattaaaaactaaaaataagataaaaataaaaagctatcTTTGACACAGCTCGTCACCCGCCCATTCTCTTCCCAAGCGCCCCTTCTTCACTGCTGGTTTCTAGTAGTCCTGCCCATCCTCTGGGTAGCCCCCCTGGTAGCCCTCATCCTGGTACTCTGGGTAGTAGGCCACAGCCTCTGCCCCATTCTCTCCACCCTCGCTCTTGGGGCAGTACTTGGCGTCGTAGATCTGCCGGCCCAGCCCAAAGTTCTGGCCACTCTGGTTGGCGCCTTGGGTGTAGCCCATCTGCAGGGACATGGTGCTGTTGTCGCACTTGTCAGTGCCCAGTTTCTGGTCATAGATGGCACGGCGGGTGCCAGGGGCAGTCATGCCAGC
Function
NR:
description |
PREDICTED: calponin-2-like |
GO: NA
KEGG: NA
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
TU196476 |
False |
1779 |
lncRNA |
0.38 |
2 |
15205316 |
15217634 |
TU196477 |
False |
1002 |
lncRNA |
0.40 |
2 |
15179051 |
15217634 |
TU196478 |
True |
2481 |
lncRNA |
0.43 |
2 |
15215130 |
15217634 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
AMCG00006099 |
kank3
|
coding |
downstream |
55723 |
15104332 ~ 15123328 (-) |
AMCG00006094 |
NA
|
coding |
downstream |
75519 |
15098331 ~ 15103532 (-) |
AMCG00006100 |
NA
|
coding |
downstream |
90143 |
15080401 ~ 15088908 (-) |
AMCG00006098 |
NA
|
coding |
downstream |
101283 |
15074200 ~ 15077768 (-) |
AMCG00006097 |
NA
|
coding |
downstream |
118290 |
15050921 ~ 15060761 (-) |
AMCG00006080 |
NA
|
coding |
upstream |
160588 |
15378222 ~ 15390581 (-) |
AMCG00006081 |
gamt,LOC107747770,LOC107597217,LOC107685360,LOC107553529,LOC107757934
|
coding |
upstream |
179618 |
15397252 ~ 15400964 (-) |
AMCG00006079 |
arrdc2,LOC106573914
|
coding |
upstream |
251607 |
15469241 ~ 15480318 (-) |
AMCG00006082 |
NA
|
coding |
upstream |
265528 |
15483162 ~ 15488681 (-) |
AMCG00006068 |
NA
|
coding |
upstream |
279119 |
15496753 ~ 15529324 (-) |
G155957 |
NA
|
non-coding |
downstream |
73518 |
15100309 ~ 15105533 (-) |
G155899 |
NA
|
non-coding |
downstream |
197430 |
14980384 ~ 14981621 (-) |
G155783 |
NA
|
non-coding |
downstream |
609215 |
14569562 ~ 14569836 (-) |
G155768 |
NA
|
non-coding |
downstream |
687122 |
14489290 ~ 14491929 (-) |
G155754 |
NA
|
non-coding |
downstream |
754305 |
14422504 ~ 14424746 (-) |
G156014 |
NA
|
non-coding |
upstream |
55179 |
15272813 ~ 15330546 (-) |
G156028 |
NA
|
non-coding |
upstream |
148470 |
15366104 ~ 15367641 (-) |
G156048 |
NA
|
non-coding |
upstream |
200344 |
15417978 ~ 15423850 (-) |
G156049 |
NA
|
non-coding |
upstream |
209674 |
15427308 ~ 15431930 (-) |
G156104 |
NA
|
non-coding |
upstream |
364223 |
15581857 ~ 15584766 (-) |
AMCG00006102 |
slc5a5
|
other |
downstream |
171072 |
14998500 ~ 15007979 (-) |
AMCG00006043 |
NA
|
other |
downstream |
394771 |
14782506 ~ 14784280 (-) |
AMCG00006037 |
rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535
|
other |
downstream |
496071 |
14679797 ~ 14682980 (-) |
G155770 |
LOC103376870
|
other |
downstream |
669437 |
14509233 ~ 14509614 (-) |
AMCG00006013 |
LOC105011475,LOC106613699,LOC106573549
|
other |
downstream |
837448 |
14336891 ~ 14341603 (-) |
G156088 |
rps15,LOC107680474,LOC107685215,LOC107578086
|
other |
upstream |
215798 |
15433432 ~ 15491642 (-) |
G156206 |
klhl26,LOC107680559,LOC107597147
|
other |
upstream |
736442 |
15954076 ~ 15957090 (-) |
AMCG00006083 |
NA
|
other |
upstream |
1236650 |
16454284 ~ 16462165 (-) |
AMCG00006118 |
NA
|
other |
upstream |
1287730 |
16505364 ~ 16521689 (-) |
G156341 |
NA
|
other |
upstream |
1433906 |
16651540 ~ 16680772 (-) |
Expression