G155989 (LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101)



Basic Information


Item Value
gene id G155989
gene name LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15179051 ~ 15217634 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU196476
GTtcatatatacaaaacatttattacatgCATTACAGTTTGCTCCCCgtcttccctccccctcttgTGCAATCAATGTCCACTGCaagctttcaattaaaatattcaaattaaaaaaaaagcatcaggAACATTTAAAGATTGATGACATAACTAATTTCCCTCTGAGGCAGATCTGCACAGGCCCAGTCCTGCTGCAATTAAAAGACTAAAGGCAATTTCTCAAATCTGGTGCAATCTAAAACCCAAAGATGCGGTTGCCCACTAAGACTGGATTTCTGCATGCCTGCCTATTTGGAATCTgagcagaataaaaacaaaactccaaGAGGAAACCAGTTACAAGGATCAAAAGAGTTCACATTATTCCTGGGCCTGCCTGGCCCATCCTCCATCCGTTTCTCATTCTGTCTCTTCAAGCAACGTGGAAAGTAGAGAGTCTTAACAAAATAATCCAATCGATTCCAGTTCCGAGTGCGGAATGTGCGGAGCTTGGCTTTGGAATGTTCCGAGACGCACCGATCCAAGCAAAACAAGCGAGGCCCGGTTATCAAGGCAGTGACACTGGTTAAGCAAACAGTACACATGGCTATACaaggtgaaaatatatataaaaaaaaaggggaaatcaTACTCAAGAGGTATTAACAGTGGTAAAGTAGGTGAAAACCGTAAATTGAACATTGTCATGGCATCTTAACGCCAGGTTTTAAAAGAGTGGAATGTTGATCACGGAACAGAAACCTAACCTTCCATCCTACTAATGTGGGGTTTCCATAACCCTGTGTTTAATTAAGctttttccaacatttttaAGCTAATTGGTCCCTCATTAAGATCCATCAACACAAGAACATTTTGGAAGATGGATAGACCCAAGGTCGAGGGGATGGGATGGAGAGAGTGACCAGTCAAGAAGTACAAGTTCTAAGCAATTTAGTATGCACCTCTGCAGGTCATAtccacagattgtttttttttttttttttgttctgcgATTAAGATGGTCCTGCATGAAATGTTAGGCTGATGCACAGTAAGTCACTTGTAGTATCAATGGGAGCATCCCGGAGGATTGGTCACAGTCATAGCTTAGAAACTGTGCCACACTACATCAAAACAAGGGGAGGCTGTATATTGCAATTCAACCAGCAATCTCCATCTGCTCAGtgaaagtaatatttaaaaggcaaaatGTATAGATCTGCTAAAGAGAGaatagcacaaaataaaaatagtcccttatatataaaaaataaccagTTTAATAgcactttaaatttaaaaggtGATCAATATTGTCACTTTCATTGTAAgcgatttaaaaaaattatacaaattagcACAGCCTCAGTttgacaatataaaaatacttgaatTCTAGAGTTGGTTACCACACAAGGGGAAATGGCTGTGCTTCTTAAATTAGTATCACTGATACAAACCCTTACTTAAAACATTCATACTTAAAAAAGGGACCCCCTTGTTTCAAGATGCggtataaataaaattgaaaaacgAAAAAGTTCATCTGCAGGCAAGTTTTCATTGGGTCCCCTTTATCCCTGTAAACATCCCTGTAAGTCGCTGCATTCCTCATGTTTTCAAAGGACAGccaaggaggggggggggtttgggTGAGTGTCATGGGAAAAACTGTAGATCTTCCTGGGTTATGCACAACAGTATCGCATACGTCAACCGtgggatatatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaaaaaaaaaaaaaaaaaagtt
>TU196477
GTtcatatatacaaaacatttattacatgCATTACAGTTTGCTCCCCgtcttccctccccctcttgTGCAATCAATGTCCACTGCaagctttcaattaaaatattcaaattaaaaaaaaagcatcaggAACATTTAAAGATTGATGACATAACTAATTTCCCTCTGAGGCAGATCTGCACAGGCCCAGTCCTGCTGCAATTAAAAGACTAAAGGCAATTTCTCAAATCTGGTGCAATCTAAAACCCAAAGATGCGGTTGCCCACTAAGACTGGATTTCTGCATGCCTGCCTATTTGGAATCTgagcagaataaaaacaaaactccaaGAGGAAACCAGTTACAAGGATCAAAAGAGTTCACATTATTCCTGGGCCTGCCTGGCCCATCCTCCATCCGTTTCTCATTCTGTCTCTTCAAGCAACGTGGAAAGTAGAGAGTCTTAACAAAATAATCCAATCGATTCCAGTTCCGAGTGCGGAATGTGCGGAGCTTGGCTTTGGAATGTTCCGAGACGCACCGATCCAAGCAAAACAAGCGAGGCCCGGTTATCAAGGCAGTGACACTGGTTAAGCAAACAGTACACATGGCTATACaaggtgaaaatatatataaaaaaaaaggggaaatcaTACTCAAGAGGTATTAACAGTGGTAAAGTAGGTGAAAACCGTAAATTGAACATTGTCATGGCATCTTAACGCCAGGTTTTAAAAGAGTGGAATGTTGATCACGGAACAGAAACCTAACCTTCCATCCTACTAATGTGGGGTTTCCATAACCCTGTGTTTAATTAAGctttttccaacatttttaAGCTAATTGGTCCCTCATTAAGATCCATCAACACAAGAACATTTTGGAAGATGGATAGACCCAAGGTCGAGGGGATGGGATGGAGAGAGTGACCAGTCAAGAAGTACAAGTTCTAAGCAATTTAGTATGCACCTCTGCAGGTCATAtccacagattgtttttttttttttttttttttttttttttaa
>TU196478
GTtcatatatacaaaacatttattacatgCATTACAGTTTGCTCCCCgtcttccctccccctcttgTGCAATCAATGTCCACTGCaagctttcaattaaaatattcaaattaaaaaaaaagcatcaggAACATTTAAAGATTGATGACATAACTAATTTCCCTCTGAGGCAGATCTGCACAGGCCCAGTCCTGCTGCAATTAAAAGACTAAAGGCAATTTCTCAAATCTGGTGCAATCTAAAACCCAAAGATGCGGTTGCCCACTAAGACTGGATTTCTGCATGCCTGCCTATTTGGAATCTgagcagaataaaaacaaaactccaaGAGGAAACCAGTTACAAGGATCAAAAGAGTTCACATTATTCCTGGGCCTGCCTGGCCCATCCTCCATCCGTTTCTCATTCTGTCTCTTCAAGCAACGTGGAAAGTAGAGAGTCTTAACAAAATAATCCAATCGATTCCAGTTCCGAGTGCGGAATGTGCGGAGCTTGGCTTTGGAATGTTCCGAGACGCACCGATCCAAGCAAAACAAGCGAGGCCCGGTTATCAAGGCAGTGACACTGGTTAAGCAAACAGTACACATGGCTATACaaggtgaaaatatatataaaaaaaaaggggaaatcaTACTCAAGAGGTATTAACAGTGGTAAAGTAGGTGAAAACCGTAAATTGAACATTGTCATGGCATCTTAACGCCAGGTTTTAAAAGAGTGGAATGTTGATCACGGAACAGAAACCTAACCTTCCATCCTACTAATGTGGGGTTTCCATAACCCTGTGTTTAATTAAGctttttccaacatttttaAGCTAATTGGTCCCTCATTAAGATCCATCAACACAAGAACATTTTGGAAGATGGATAGACCCAAGGTCGAGGGGATGGGATGGAGAGAGTGACCAGTCAAGAAGTACAAGTTCTAAGCAATTTAGTATGCACCTCTGCAGGTCATAtccacagattgtttttttttttttttttgttctgcgATTAAGATGGTCCTGCATGAAATGTTAGGCTGATGCACAGTAAGTCACTTGTAGTATCAATGGGAGCATCCCGGAGGATTGGTCACAGTCATAGCTTAGAAACTGTGCCACACTACATCAAAACAAGGGGAGGCTGTATATTGCAATTCAACCAGCAATCTCCATCTGCTCAGtgaaagtaatatttaaaaggcaaaatGTATAGATCTGCTAAAGAGAGaatagcacaaaataaaaatagtcccttatatataaaaaataaccagTTTAATAgcactttaaatttaaaaggtGATCAATATTGTCACTTTCATTGTAAgcgatttaaaaaaattatacaaattagcACAGCCTCAGTttgacaatataaaaatacttgaatTCTAGAGTTGGTTACCACACAAGGGGAAATGGCTGTGCTTCTTAAATTAGTATCACTGATACAAACCCTTACTTAAAACATTCATACTTAAAAAAGGGACCCCCTTGTTTCAAGATGCggtataaataaaattgaaaaacgAAAAAGTTCATCTGCAGGCAAGTTTTCATTGGGTCCCCTTTATCCCTGTAAACATCCCTGTAAGTCGCTGCATTCCTCATGTTTTCAAAGGACAGccaaggaggggggggggtttgggTGAGTGTCATGGGAAAAACTGTAGATCTTCCTGGGTTATGCACAACAGTATCGCATACGTCAACCGtgggatatatttaaaaaaaaaaaaaaggaaaatggtaGGATGTTGCAGATACACGATTTGGAAAGACTCTAGCTGGTCCTCTTCTAGGGATTAAACAGTTTTGAAGCCAACCCCCCCcttaaaaaggaagaaaaaagccACCTGTGatcaaacaataaacacatactGTTCTTCATCTCACTGGGAGGGGCCACAATCTGGTTTCTGCCAGGACTGCAATGGATGCTGagagcctctctctctgtacagttTCCTCCTGCCTGGATGCTTGGCAAAGAGGCTGCTACGAGCTTCTTCACTGGTCAGAAAAACCCCTAAACAAGAACATCTCCTCAGAGAGGCACATCAAATTCCATTCTTCATCAAGTCTTCATTTCGGGAACAAACTACCAAGATAGGgggaattaaaaactaaaaataagataaaaataaaaagctatcTTTGACACAGCTCGTCACCCGCCCATTCTCTTCCCAAGCGCCCCTTCTTCACTGCTGGTTTCTAGTAGTCCTGCCCATCCTCTGGGTAGCCCCCCTGGTAGCCCTCATCCTGGTACTCTGGGTAGTAGGCCACAGCCTCTGCCCCATTCTCTCCACCCTCGCTCTTGGGGCAGTACTTGGCGTCGTAGATCTGCCGGCCCAGCCCAAAGTTCTGGCCACTCTGGTTGGCGCCTTGGGTGTAGCCCATCTGCAGGGACATGGTGCTGTTGTCGCACTTGTCAGTGCCCAGTTTCTGGTCATAGATGGCACGGCGGGTGCCAGGGGCAGTCATGCCAGC

Function


NR:

description
PREDICTED: calponin-2-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU196476 False 1779 lncRNA 0.38 2 15205316 15217634
TU196477 False 1002 lncRNA 0.40 2 15179051 15217634
TU196478 True 2481 lncRNA 0.43 2 15215130 15217634

Neighbor


gene id symbol gene type direction distance location
AMCG00006099 kank3 coding downstream 55723 15104332 ~ 15123328 (-)
AMCG00006094 NA coding downstream 75519 15098331 ~ 15103532 (-)
AMCG00006100 NA coding downstream 90143 15080401 ~ 15088908 (-)
AMCG00006098 NA coding downstream 101283 15074200 ~ 15077768 (-)
AMCG00006097 NA coding downstream 118290 15050921 ~ 15060761 (-)
AMCG00006080 NA coding upstream 160588 15378222 ~ 15390581 (-)
AMCG00006081 gamt,LOC107747770,LOC107597217,LOC107685360,LOC107553529,LOC107757934 coding upstream 179618 15397252 ~ 15400964 (-)
AMCG00006079 arrdc2,LOC106573914 coding upstream 251607 15469241 ~ 15480318 (-)
AMCG00006082 NA coding upstream 265528 15483162 ~ 15488681 (-)
AMCG00006068 NA coding upstream 279119 15496753 ~ 15529324 (-)
G155957 NA non-coding downstream 73518 15100309 ~ 15105533 (-)
G155899 NA non-coding downstream 197430 14980384 ~ 14981621 (-)
G155783 NA non-coding downstream 609215 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 687122 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 754305 14422504 ~ 14424746 (-)
G156014 NA non-coding upstream 55179 15272813 ~ 15330546 (-)
G156028 NA non-coding upstream 148470 15366104 ~ 15367641 (-)
G156048 NA non-coding upstream 200344 15417978 ~ 15423850 (-)
G156049 NA non-coding upstream 209674 15427308 ~ 15431930 (-)
G156104 NA non-coding upstream 364223 15581857 ~ 15584766 (-)
AMCG00006102 slc5a5 other downstream 171072 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 394771 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 496071 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 669437 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 837448 14336891 ~ 14341603 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 215798 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 736442 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1236650 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1287730 16505364 ~ 16521689 (-)
G156341 NA other upstream 1433906 16651540 ~ 16680772 (-)

Expression



Co-expression Network