G156003


Basic Information

Item Value
gene id G156003
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15207520 ~ 15318177 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU196497
acacaccACTGCCTTAAAAGtgaattcaaatgttttaatttgttgttgatAGAAGAAAGCCATCTGACATCACCTAAATCACACACTTGAACACCTCACACAAGTTTAGATGTGAAAGcccttttgtttctcttgtaatgtttttattttgtttattttcatttttcttcttacCTTTCTGGAGAGTTTGCAACATGACCGCGCACCCCCCCCGTCCTCTCTGTGCTCCAGAAGATGAGATTTCAATCTGCATCAATCTGTGCGCATATATCTGGATTAAATAATAaggtatatatgtttatatatatacattcataagAACAAACGTATGCTGTACATCTATTGATCAGCACCTACAGCTGCAATGCTGAAGTTggaattaaaatctaaaaaataaacctaatttCAACCTAATTTCTGCTTTTCAACTCCATGGTTTGTGTTGAatatccattattaaaaaaataataataataaaaatgaaaggaatcCGTTTTCAGTCTGATCAGTTCAATTTAGCTTTGTATTGCTTTGGTAAAAAATCAAGTGCTTAGTTGATTCTAATCTGGAATTGTGTATTGGTGTTCAATATGTACAATTCACAGCATTCCCCTTTACTGTAGCATTGGGGTATAGTGcgaggaaaagaaaatataatattcacTGTTGATCACTTTCCAAACAGCATACTGGAACTGTAAACTATATAAAACATGGAGGACTGAAACCATGAAAGTCATCAAGAACAAATCTGGGCTGGCCAATCGACCAagaaacacatataaaaataaaacaaaaactttggtAAATTTACATCACTGTCACTTGTAGGCCCTTCCCAGGTCAGATGTCGTCTACCATTTCTTTGTACGTGTTTAAGAGAGAGAAaaaaaaaaaaaaaaaaac
>TU196498
acacaccACTGCCTTAAAAGtgaattcaaatgttttaatttgttgttgatAGAAGAAAGCCATCTGACATCACCTAAATCACACACTTGAACACCTCACACAAGTTTAGATGTGAAAGcccttttgtttctcttgtaatgtttttattttgtttattttcatttttcttcttacCTTTCTGGAGAGTTTGCAACATGACCGCGCACCCCCCCCGTCCTCTCTGTGCTCCAGAAGATGAGATTTCAATCTGCATCAATCTGTGCGCATATATCTGGATTAAATAATAaggtatatatgtttatatatatacattcataagAACAAACGTATGCTGTACATCTATTGATCAGCACCTACAGCTGCAATGCTGAAGTTggaattaaaatctaaaaaataaacctaatttCAACCTAATTTCTGCTTTTCAACTCCATGGTTTGTGTTGAatatccattattaaaaaaataataataataaaaatgaaaggaatcCGTTTTCAGTCTGATCAGTTCAATTTAGCTTTGTATTGCTTTGGTAAAAAATCAAGTGCTTAGTTGATTCTAATCTGGAATTGTGTATTGGTGTTCAATATGTACAATTCACAGCATTCCCCTTTACTGTAGCATTGGGGTATAGTGcgaggaaaagaaaatataatattcacTGTTGATCACTTTCCAAACAGCATACTGGAACTGTAAACTATATAAAACATGGAGGACTGAAACCATGAAAGTCATCAAGAACAAATCTGGGCTGGCCAATCGACCAagaaacacatataaaaataaaacaaaaactttggtAAATTTACATCACTGTCACTTGTAGGCCCTTCCCAGGTCAGATGTCGTCTACCATTTCTTTGTACGTGTTTAAGAGAGAGAAaaaaaaaaaaaaaaaac
>TU196499
agaaaaaaaaacaaaaaaaaaGACCTGAAAATAAGCTTCACCCCAGTACCAAAGAGAACACACTAtacattcacatacacacacaaatatcttaCCGATATATACATCCACATGCATACATAAGGCATAAGTGCGTGTCAATGGTTGGCCAACACAAAATTCATGAATGTGCCACTTTACTACCAATGAAAACATGTCAAGTGCTCTGCGATTCCTCTATAATCTAACATTCCTATTCCCAGTTATACAAACGCTCACGTTCTAGCGATGCAAGTGTACGCATTTTGTTTCCACCCCAGTTTGCCATGTTACCAGGCGAAACAGAAGCTTTTTGGAAAGTAAACTGCGTTTCAAAAGGTAAGCCCCCAACTTTTGAACAGTGATACTTGGAAACGAATCGAAGTTAAACATTATCATTTCTGCGCAGAACGGCAATTCGTAGCCTTAATGAATCGCCAAGTTATATTCCAAGTTATAAAAtgaatcttattttaaaaaattgtatatgGAAAACAGCACCGGATACTTTTGGTTCATAATCGGGGGGTTGTAGGTTCAATGCGAGGAGTTCGTAATTCACCTGGACCGGCATGGACACTACATTCCCCAGCACAGGTAAGCTACGTTCACACATACGGAAATCAATAGCGGTTGTTCATATATCGTTGATGGCATATCTGGTGTACGAGGCAAGTAAAGTGTATTTGGAAATATGTGAAGTTGAAGCAGTTTCCCTGCTTTCTCTGTTCGTAGTTTGCAGGCTTAAACCAGCACCCAGATCTGGTTTGCTATGTCACCTCATCTGACAAGagtgattaaaattaatttgatgaCCAATGATCTTTCCTGTAGTAAATTAAGAGCAGATTCACTATGACTAAGTTTTCTCCTATATCCTTTAATGTGAGAATTCTGCTTCAGCACCTTGTTTGCTGGTTAAATCAGTGGGCTGCCAAGTGCtcaaatgcaatattaaaaatcattaatcTCATTAGATAATTAAGTTAAATGAGTCAGGGAGGGTTAATCAACAGAGTGAGTTTTTCCAACAGCCTCCCCTATATTAAACTGTGGTGTACCCTGCTAAAGGCACAGAAAATTGCAGCGAAGCACCGGCAAATCATAGCAAGTGCCTGAGAAGAGAGATGAGCGATGGAAATGCAAAGGAAACTAAACTAAGTATAATCAAGAAGGAAAACGGCAAAAGTAGGGTGCacgttttccatttttataagGGTCGAAGCTTCCGAAAGCCTGGAGTCCAAGCTGGCTCAGTTCACTCTGAGGGTCGCCACCTCTTAAAGCTTCACGCAGATactgaaacaataaataaaaatggatgcGGCTTTCCTACGTTTCGGTGCTTCAGTCCATGTCTGGCGATACTACTTCGATACTACTTAGTATCTAATGCATCCCAGGGGTAAAAAGAGGACGTTTGGATCCTAGTAAGAGTGGAAATTTTGTTGAggagtgtcttttttttttttttttttttttttaaggacgGCTTTTCCTGCCCCTTAAGTTGAAGCTGCATATCACATCGTAATCCCTGATCTAGAACCCTATCCCAGGCGTGAGACATCTTGGGAGGGGGGAGGCAGCCAGTCCTCGAGTGACGCCCggtatgattattataattttttttttttttttactttttaacccCCCCCACAGGGTGCGATCTGAGATGCAGCCTCTCTgcccctccttccctcagctCATCTGCTCCAGGTAGGCAGACAGCAGCAGGTCCGGGGGCAGGAACTCCTCTTGTTTGTTCACCACCTCCGTCTGGCGAGCCCCGTTGCAGTCGGA
>TU196500
acacaccACTGCCTTAAAAGtgaattcaaatgttttaatttgttgttgatAGAAGAAAGCCATCTGACATCACCTAAATCACACACTTGAACACCTCACACAAGTTTAGATGTGAAAGcccttttgtttctcttgtaatgtttttattttgtttattttcatttttcttcttacCTTTCTGGAGAGTTTGCAACATGACCGCGCACCCCCCCCGTCCTCTCTGTGCTCCAGAAGATGAGATTTCAATCTGCATCAATCTGTGCGCATATATCTGGATTAAATAATAaggtatatatgtttatatatatacattcataagAACAAACGTATGCTGTACATCTATTGATCAGCACCTACAGCTGCAATGCTGAAGTTggaattaaaatctaaaaaataaacctaatttCAACCTAATTTCTGCTTTTCAACTCCATGGTTTGTGTTGAatatccattattaaaaaaataataataataaaaatgaaaggaatcCGTTTTCAGTCTGATCAGTTCAATTTAGCTTTGTATTGCTTTGGTAAAAAATCAAGTGCTTAGTTGATTCTAATCTGGAATTGTGTATTGGTGTTCAATATGTACAATTCACAGCATTCCCCTTTACTGTAGCATTGGGGTATAGTGcgaggaaaagaaaatataatattcacTGTTGATCACTTTCCAAACAGCATACTGGAACTGTAAACTATATAAAACATGGAGGACTGAAACCATGAAAGTCATCAAGAACAAATCTGGGCTGGCCAATCGACCAagaaacacatataaaaataaaacaaaaactttggtAAATTTACATCACTGTCACTTGTAGGCCCTTCCCAGGTCAGATGTCGTCTACCATTTCTTTGTACGTGTTTAAGAGAGAGAAaaaaaaaaaaaaaaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196497 False 906 lncRNA 0.34 2 15257499 15298400
TU196498 False 905 lncRNA 0.34 2 15257499 15298400
TU196499 True 1821 lncRNA 0.42 2 15295713 15318177
TU196500 False 905 lncRNA 0.34 2 15207520 15298400

Neighbor

gene id symbol gene type direction distance location
AMCG00006101 LOC106573875 coding downstream 26203 15161321 ~ 15181317 (-)
AMCG00006099 kank3 coding downstream 84192 15104332 ~ 15123328 (-)
AMCG00006094 NA coding downstream 103988 15098331 ~ 15103532 (-)
AMCG00006100 NA coding downstream 118612 15080401 ~ 15088908 (-)
AMCG00006098 NA coding downstream 129752 15074200 ~ 15077768 (-)
AMCG00006080 NA coding upstream 60045 15378222 ~ 15390581 (-)
AMCG00006081 gamt,LOC107747770,LOC107597217,LOC107685360,LOC107553529,LOC107757934 coding upstream 79075 15397252 ~ 15400964 (-)
AMCG00006079 arrdc2,LOC106573914 coding upstream 151064 15469241 ~ 15480318 (-)
AMCG00006082 NA coding upstream 164985 15483162 ~ 15488681 (-)
AMCG00006068 NA coding upstream 178576 15496753 ~ 15529324 (-)
G155957 NA non-coding downstream 101987 15100309 ~ 15105533 (-)
G155899 NA non-coding downstream 225899 14980384 ~ 14981621 (-)
G155783 NA non-coding downstream 637684 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 715591 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 782774 14422504 ~ 14424746 (-)
G156028 NA non-coding upstream 47927 15366104 ~ 15367641 (-)
G156048 NA non-coding upstream 99801 15417978 ~ 15423850 (-)
G156049 NA non-coding upstream 109131 15427308 ~ 15431930 (-)
G156104 NA non-coding upstream 263680 15581857 ~ 15584766 (-)
G156113 NA non-coding upstream 297385 15615562 ~ 15615787 (-)
AMCG00006102 slc5a5 other downstream 199541 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 423240 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 524540 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 697906 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 865917 14336891 ~ 14341603 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 115255 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 635899 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1136107 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1187187 16505364 ~ 16521689 (-)
G156341 NA other upstream 1333363 16651540 ~ 16680772 (-)

Expression


Co-expression Network