G156049


Basic Information

Item Value
gene id G156049
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15427308 ~ 15431930 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU196556
tttttttcttcaaaacttttNtttttttttttttttttttttttgtactttcatCAAGTATGTATGTGAttgtcacaaaaaaaacaagtcctCAAATTCAGAATCCCTGGTCAGAGGTACACACCAGAAATCCAGTTGTGAACAGAATAATTTCCCTGACGTAAGATAGTTAAGCTCTGTGGGGTACGGTGTGCCCTCAGCGTCGATATGGGTGGAAGCCCTGTACGTTGTGATTCTGTCCTCGGCCGAAGCTGCTGCCTGCTGGCTGGGGCCCAGCGGCCGGCTGTGCTGAAGGCGCTCCGTAGGTGGGTGCTCCCTGGCTGGGGTCTGCGAAGCTCTGCCCAAACCCAGCTATGTCCTGCCCATAACCTGCTTTGTGCAAGACAACAGAAACCACCATTTAGACAATCGGCCTCAATGCTCACAGTTCGCTAGAGAGCGTTGCGACTCGCACTATATTACCAAAAGCTTTAGGATATGAGAGACGAAAAGACAGGCCTGTCCTGAAGGGTCTCTGTAGGACGGAGCTCAAAACTGAGCCATGAAAGGTTGTCAGTGCTGTTCTCCTTGAGGTCTTAAATTCACCGCTTCTTGTTTGAACCTTTTAGAAGATGTAAAAAATCCAATGCTGCCAAGACCCAATTACTTATCTGCCCAATTTAATACCAAGCAATAATTCCTGTTGTACATGCTCACTGGGGCACTGGTCCCATTACTTTTGGTATTACAGAGAATGTGAAAGCGGTGATACTCACCTCTGTTCCTGGACAAGCAAGAcagcattttattgtttgtttttaccccCAAGAAGTCTTCATGACTTAATTTGTGATGCAATTGATGTTTAAGAGTGCTATGCAACACAGTATTTTATCACAATAATGGGGAAAACATTTACTTactcatttaacagaaataagatTAGTTCAAAGGTATTACTTTTGTATCTATTCATGTATATACTCAGGTGTAATAGGTGATATGTTTGACCCAGTTTGACATGACTGGCCACAACCAGGCATGGAGGGGATCTTGGACtgtatagatgttttttttaatccaactgtcaaataaactaatttatacataataataagtCAATTTTAAGGAATGCAATCccagccatttaaaaataacctaCAATAACGTGCTCGGATAATTTTctTTGGTGCCTTTTCCTAGAAATATTGCCACTTTCTCTTGCTTCTCTCAGGctttccccctcccctctctgtcAACTGAAATCAAAGGAAGGTTTGCTAGAGTAAATGTGCCTTCCTTTTTTATTCTGCCATTTCAGAGGGAAAaaggtacaaaaataaaaatgtttgttactatctctgcaataaaaaaacaagtgccACACTAAATTTATTGAGATGAGTTATgctgtgtgttatatatacactataattatgaatgtaaaatacatattttctgtataatatGACTACCAGACATGTTGGTTTTCTAAAGGACTCCAGGCCACTGAAATTGGGTGATACCATCTAACCAAACTGGATTAGAGCAGACAGAATATCAATGCTTTCATGAGCAACTGGCATTGTTATCATCAATTGATGTGAAGAAGTTGTCACATGAAAACAGGGCATAAGACGTCTGTGAAAGTGTGTAAAAGAAGGTCAGAGTCCAGAGATATGCAGTTTTATGATCAAATCTTCTCATTGGAATTCATGTCAAACTGTACACACAACttaaatgacagaaaacaaatacaataaatgaaatggaaacaaaaacatgaatacaaaaaaagaaaacaataacaattagaTCATCCTTTACCAGCAAAGCATTGCAGgaagagaaaatacatatagAGACTACACAATACGTACCCAGAAGCACAGACACCCTGAGTTAAGTTGGGTTCGTATATTAAACTACAGCTATTTAAGTGGAAAGAGAATTTCGTCCCTcagatttttgcattttgacatTCTCACCAGGTATGAAAGTGTTTTTGCCCCTCACTTCGATCTCTGCTCTCAGTGATTCagtgaaaaatctaaaacaaagcaaaccaaccaaaaaaagcTTGTTTTCAGACCACAATCAGAAACATTAATGTAGAGATGTACTTAAGATTTCCAAGGCTTTTCACACCTAGTGAGAGCTGAACCAAAACTGCCAGCACCATCCAAGCCAACTCTAACATCCGATCTGCATAACCCTACTTGAACCTGCATAGCTGTATTTTagtatacttaaaaaaacaaaaaaaaatacaggttaGGAAAGAACAAATCATCTTGCATGGTTCATTATTGCTGCTACCGAACCAGCTATTGGGCTATTTTGTGGTGTGAAAAGCAACGCTCCACCTACCTGCACTACATCCCTGCTCAGCCTGACCATTATTGTGAGAAGGACGCGCTGGTCCGTAGCCAGAAGGGTCCTGAGGATAGTTACCCAAGCCTATTAGGGAGACGAGGAGACCAGGTTGACTAAACCCAGGAGATCCTATTTGACATTGTTGCTATGGAAGAGGTCCCAGTCATTACCCCTGCCGCTGCCATCGCTCCTGTAACTGGCGGCTCCAAAAATTGTCAAAACTACCCAACTAGCTGGCAGCCCCAGTTGAATCCGATGAACAAAACAATTTGTAGTTTCTATCACTGAAATTAgactttcaaatgtaatttttaaataaggtggtggtgggggggtggaacaGAATAGGAATGGAATTGTCCCAAGACGATGGAAGACAAAGGTTTTGGGTCTTCTGGCCATGTTTTGACTTGTTTGCGGTGAGGAGGATTCTCATTCCAAATACCTAACATCTGTCATACCGCTACTATGCCGCCAGAGCAAAGCAAACTAATGTGCACAAACTCGCTGATCCATTCCCCCCCAGCACCGAACTCTGCAACTCCGGTGTCCTCACAGCTGGAGCGTCCATCTGTCGCTGGAATACACATGACTGCTTCACACTCGCATTGCGGCCTGCTCTCCCCAACAACGCAGGCTTCGAAACAATTCAGGCGTGAGCAGGACACGGAAAGCACAGATATAATGGCACACTTTTCTGAACACAAAAGGGTcaaccttttcattttcagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196556 True 3088 lncRNA 0.41 3 15427308 15431930

Neighbor

gene id symbol gene type direction distance location
AMCG00006081 gamt,LOC107747770,LOC107597217,LOC107685360,LOC107553529,LOC107757934 coding downstream 26344 15397252 ~ 15400964 (-)
AMCG00006080 NA coding downstream 36727 15378222 ~ 15390581 (-)
AMCG00006101 LOC106573875 coding downstream 245991 15161321 ~ 15181317 (-)
AMCG00006099 kank3 coding downstream 303980 15104332 ~ 15123328 (-)
AMCG00006094 NA coding downstream 323776 15098331 ~ 15103532 (-)
AMCG00006079 arrdc2,LOC106573914 coding upstream 37311 15469241 ~ 15480318 (-)
AMCG00006082 NA coding upstream 51232 15483162 ~ 15488681 (-)
AMCG00006068 NA coding upstream 64823 15496753 ~ 15529324 (-)
AMCG00006067 upf1,LOC105907049 coding upstream 112908 15544838 ~ 15559349 (-)
AMCG00006069 pgpep1,LOC103360783,LOC104958139 coding upstream 133532 15565462 ~ 15574687 (-)
G156048 NA non-coding downstream 3458 15417978 ~ 15423850 (-)
G156028 NA non-coding downstream 59667 15366104 ~ 15367641 (-)
G156014 NA non-coding downstream 96762 15272813 ~ 15330546 (-)
G156003 NA non-coding downstream 109131 15207520 ~ 15318177 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding downstream 209674 15179051 ~ 15217634 (-)
G156104 NA non-coding upstream 149927 15581857 ~ 15584766 (-)
G156113 NA non-coding upstream 183632 15615562 ~ 15615787 (-)
G156203 NA non-coding upstream 515278 15947208 ~ 15947527 (-)
G156207 NA non-coding upstream 562857 15994787 ~ 16000039 (-)
G156225 NA non-coding upstream 630803 16062733 ~ 16063072 (-)
AMCG00006102 slc5a5 other downstream 419329 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 643028 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 744328 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 917694 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 1085705 14336891 ~ 14341603 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 1502 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 522146 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1022354 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1073434 16505364 ~ 16521689 (-)
G156341 NA other upstream 1219610 16651540 ~ 16680772 (-)

Expression


Co-expression Network