G156088 (rps15,LOC107680474,LOC107685215,LOC107578086)


Basic Information

Item Value
gene id G156088
gene name rps15,LOC107680474,LOC107685215,LOC107578086
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15433432 ~ 15491642 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU196599
cctTGGCTAAGTCGATGTTTGGGTAGTACTTTCTATACACACTGTACCGCTATACAAATATCTTGCAAAACCCCactataaatagaaaataaactgcataaattaCAGAACTGCCAGTATCCTGAACGATGGCTCACAGGAACTGGGTCCCACGTTCTAAACTAGGCTGTTTAGTCTCGATCAAAGCAATGTTATTCTTGAGATAGatgtttatttagtaaaattGATATGAACACCAATCTGAATTCCCATCAGTTTAGTCCTGGACAGAATTCAAAAGATGTACaaggatgaaaaataaaaatgggatgCAAGCAACTAGTATTCAGACCACTGATGTTAAAAGATGGCTATAGATTAATTTGGCTTGTCCTGTGCAATATCTAAATTGTTACACCATGTATGACATTCGATAGATACTTCAAGAGACTCTAAACAAACAGTTTCATAGATTTACAACTGATGCATGGGACTGGGTACAGTTAAAACAGTTTGTGCTGCCATCTATTGTGCAAGACGCACACTGCAATCAATTTCCCCTGGCATTAATTTATGCAGCACCTACAAGTGAAAAACTCGAGCAGTGCACACAACTGAATCCAGGTCGACCGAGATCTCACAAGCATGAGAACGTCCACCCATTTATCCAGCTTGAGGACAGACGCACAGAAGGGACAGAGGCAGCCGTGGTGGAGAatcactgttttatttacagACAGACTCTGCAGCAGGTTTACTTCAGAGGGATGAAGCGAGAGGAGTGGGTGGCTCCAATACCGGGGCGACCGTGCTTCACGGGCTTGTACGTGATGGAGAACTCGCCCAGGTAGTGGCCAATCATCTCAGGCTGATTTCCACCTGGTTGAAGGTCTTGCCGTTGTAGACGCCCACCATGGAGCCCACCATCTCAGGCAGGATGACCATGTCCCTCAGATGGGTCTTCACCACCTCGGGCTTCTCCATGGGCGGGGCCTCTTTCTTGGCCTTGCGCAGGCGCTTCAGGAGAGACTGCTGCTTGCGGCGCAGCCCGCGGTTCAGCCTCCGGCGCTGACGGGCGCAGTACAGCTGCATCAGCTGCTCGCTGTGGAGAGGAGATGGGCAAAGTTTGTCAGGTGGACCACTGGGACACAAATGCAGGATAACTTGTCCCTGACATCATTGGATTGGATTCAATGTTTGAGATCCATAGTTTGCAAAAGCTGTGCCACAT
>TU196602
cctTGGCTAAGTCGATGTTTGGGTAGTACTTTCTATACACACTGTACCGCTATACAAATATCTTGCAAAACCCCactataaatagaaaataaactgcataaattaCAGAACTGCCAGTATCCTGAACGATGGCTCACAGGAACTGGGTCCCACGTTCTAAACTAGGCTGTTTAGTCTCGATCAAAGCAATGTTATTCTTGAGATAGatgtttatttagtaaaattGATATGAACACCAATCTGAATTCCCATCAGTTTAGTCCTGGACAGAATTCAAAAGATGTACaaggatgaaaaataaaaatgggatgCAAGCAACTAGTATTCAGACCACTGATGTTAAAAGATGGCTATAGATTAATTTGGCTTGTCCTGTGCAATATCTAAATTGTTACACCATGTATGACATTCGATAGATACTTCAAGAGACTCTAAACAAACAGTTTCATAGATTTACAACTGATGCATGGGACTGGGTACAGTTAAAACAGTTTGTGCTGCCATCTATTGTGCAAGACGCACACTGCAATCAATTTCCCCTGGCATTAATTTATGCAGCACCTACAAGTGAAAAACTCGAGCAGTGCACACAACTGAATCCAGGTCGACCGAGATCTCACAAGCATGAGAACGTCCACCCATTTATCCAGCTTGAGGACAGACGCACAGAAGGGACAGAGGCAGCCGTGGTGGAGAatcactgttttatttacagACAGACTCTGCAGCAGGTTTACTTCAGAGGGATGAAGCGAGAGGAGTGGGTGGCTCCAATACCGGGGCGACCGTGCTTCACGGGCTTGTACGTGATGGAGAACTCGCCCAGGTAGTGGCCAATCATCTCAGCTTGATTTCCACCTGGTTGAAGGTCTTGCCGTTGTAGACGCCCACCATGGAGCCCACCATCTCAGGCAGGATGACCATGTCCCTCAGATGGGTCTTCACCACCTCGGGCTTCTCCATGGGCGGGGCCTCTTTCTTGGCCTTGCGCAGGCGCTTCAGGAGAGACTGCTGCTTGCGGCGCAGCCCGCGGTTCAGCCTCCGGCGCTGACGGGCGCAGTACAGCTGCATCAGCTGCTCGCTTAGGACATGTCCAGGAGCTGGTCCAGGTCCACGCCTCTGTAGGTGAACTTCCTGAAGGTGCGCTTCTTCTTTTGCTCAACGTCCGccttgagaaaagaaaaaggaaaaaaaaaaaaagtcagtttaGTAAGTGTAAACTCCAACTTTACAGATACAGGTCATTGTTCAACCACTTTGAATCcaattataaaacaacacaGGTCTGTGCACGAAGAAACCATCATATAAGCCAGTGGTGGTCAATCCCGGCCCTGGTGGACCCCCTGTCctcttattacacaatttaaagtgtAATCTAAACAGATTGTTACTTaaattagggttcaattaagtaatcgagagctcggttggaagaaaaagaaaacgagCAGGGTAAGGAACCACCGGTAGAAGCTATAGTAAAGAAGTTATTGATTAGGCTTATGCAACATGGGCCTCAAATCATCCAATAGTCAACAGCTTTAGACATTTAGTGTGCGGAGATCAAAACGACAGCATTTCGACAATCCCCCCCAGCCCGATTCTGTTTCCAACCATGAACACAGGACGCATCACatcctttttatttctgtgcgGATGAAAGCACGGCTTCGTCTGACACAGCTAGAAGCTCTCATGCAGACTGGGCCTACTTCATTTTCACTTCCGAAACCCGATTACAGGACAGGGAGACATTGCGTTATTACTGCAGGTGAGTTTACGTTTCCATTTAAGTCAATCCCTCCATGGACGACAATACCGCAGGCTTCAAACACGCCTCGGGAAGCTACATCCCCGCCGTGCCGGACGGGCATCACAATCGGCGCTCGCAGAAACACGGTTCAAAGCTCCCAATCGCACACAAATACCGCCCTGCCCGCCATCCAGACACATTCGCCATCATAACCCCTCCATATGCGAACAATGAGCATGGGTGTTATGGGGTGATGGTTAAAGATACTCCAAGATACAGCATCGGTACAAAAACACATCACCCACCATCTTGCCAGGGTCTCTTCGGAAAGGACAGATCCCGATCTCTCGTAGCGTATTATCGCGATACTCATGACGACTTCCGCTGGCCGTGAATGTGACTTCCGCTTCTGGTT
>TU196604
TTTggaatcaataattaaaaaatttgCCTGGTGTGagcaagaaaaaacacagtcatgttttttttttttattattaacgtTTATTGGACACATCTCTACCAAGCTGGGCAGCCTCCAAGCAGGATACTGCGCTTACTTCAGCTTCTTCTTGGGGCGCAGGTTGTTGGTGTGGCCACACTTCTTCTTTCTGCAGTTCACGGCACGGGGGTGAAGGCGGGCGTAGCACCTGTGGGACAAACACTGCAGCGTCAGACCTCAGACCGACAGGCCCACCGATCACAATTAAGACAACTGATAAGAGGTGGAATGACTCGATCATTGGCCAGGATCTACTGCTATTTCCTGCATACCCAGGTTGTATTTAGTTTAAGTATAAAGTTGTGTAAGGAAATTAGAGTAAGAGAACtctggttccttaataagataataaggAAGTCAAATTAAGAGtcaaatttaatcaaattacttaattgaagggttcaattaaattattgagctcagttggaacaaaaaccagcagggtatggCCTCCTCCGGGACCAGGGGtgagaaccactgccctagCCTATATctcttacatttgtttaaaagtttGATTACTGTGAAAAAGGCATATCTGCACAACTTTTGCAACCATAGGAAATACTCCTGCCAGGACTGATTTACTTGAAAACAGTCAGTAGTGGGACCTGCATTTCACTGCAACTCATTCAAACTGAATAAAACCACATAATTAGAAACTGGAAAGCCAGCATTGTACTCCTTGTATCCCATTTGGACATATGGGGAGATTTCAGACTTCAAAACCAAAAGGTCCACTTACTTGCGGCAGATCATTTTGTCGCAGTTGTATTTCTGAGCCAGCTGCCTCAGGGAGGGCTCGATGATCCCACCGCGCAGACGCAGGACGAGATGGAGGGTTGATTCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCAGGAGGAATCCTTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCATCTTTGCAGGCTGCTGGACAAAACAAGCAGAGATGCTGTCAACCAGCTAGCATAGGAACTGCAATGCCAGGAGCTGggttcacagacccagattaacACTAG

Function

symbol description
rps15 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS15 (ribosomal protein S15).

NR:

description
PREDICTED: 40S ribosomal protein S15 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196599 False 1210 lncRNA 0.47 2 15435124 15436866
TU196602 True 2171 TUCP 0.47 3 15433432 15436866
TU196604 False 1215 TUCP 0.45 3 15489402 15491642

Neighbor

gene id symbol gene type direction distance location
AMCG00006081 gamt,LOC107747770,LOC107597217,LOC107685360,LOC107553529,LOC107757934 coding downstream 32468 15397252 ~ 15400964 (-)
AMCG00006080 NA coding downstream 42851 15378222 ~ 15390581 (-)
AMCG00006101 LOC106573875 coding downstream 252115 15161321 ~ 15181317 (-)
AMCG00006099 kank3 coding downstream 310104 15104332 ~ 15123328 (-)
AMCG00006094 NA coding downstream 329900 15098331 ~ 15103532 (-)
AMCG00006068 NA coding upstream 5111 15496753 ~ 15529324 (-)
AMCG00006067 upf1,LOC105907049 coding upstream 53196 15544838 ~ 15559349 (-)
AMCG00006069 pgpep1,LOC103360783,LOC104958139 coding upstream 73820 15565462 ~ 15574687 (-)
AMCG00006075 NA coding upstream 282036 15773678 ~ 15776508 (-)
AMCG00006085 NA coding upstream 286565 15778207 ~ 15784001 (-)
G156049 NA non-coding downstream 1502 15427308 ~ 15431930 (-)
G156048 NA non-coding downstream 9582 15417978 ~ 15423850 (-)
G156028 NA non-coding downstream 65791 15366104 ~ 15367641 (-)
G156014 NA non-coding downstream 102886 15272813 ~ 15330546 (-)
G156003 NA non-coding downstream 115255 15207520 ~ 15318177 (-)
G156104 NA non-coding upstream 90215 15581857 ~ 15584766 (-)
G156113 NA non-coding upstream 123920 15615562 ~ 15615787 (-)
G156203 NA non-coding upstream 455566 15947208 ~ 15947527 (-)
G156207 NA non-coding upstream 503145 15994787 ~ 16000039 (-)
G156225 NA non-coding upstream 571091 16062733 ~ 16063072 (-)
AMCG00006102 slc5a5 other downstream 425453 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 649152 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 750452 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 923818 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 1091829 14336891 ~ 14341603 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 462434 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 962642 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1013722 16505364 ~ 16521689 (-)
G156341 NA other upstream 1159898 16651540 ~ 16680772 (-)
AMCG00006127 NA other upstream 1456355 16947997 ~ 16963650 (-)

Expression


Co-expression Network