G156104


Basic Information

Item Value
gene id G156104
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15581857 ~ 15584766 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU196629
TCAGATTCTTtccatgtcattttattttataaaaagaaaaatccaacACTTCTTGAACATTTACAATTATGACAAATCAATCCGTTTCAGCATTCAGTTTCATATATGATCtcgaacataaaaaaaaaaagttgtcttgTAAATAGGAGAGAGTTCATTGGGAGAAAGGAAATGATTACAAACTTGTCAAACAAATCAGGGTAGATGGGCGGGGGGTGATCTGAACAAACTACTCTTTTATACAGTAACACccgttcacacacacacgcacacgtacacacacacacacacactaaacagcTGGCCACTCCCTTAGCCCTGCTGGCTTTTATTATGTGAATATCCTCTCGGTCAACCCAGCTGAGTGAACAGAATGTATGAGTCATGTACCAGCCCTTGGGAGtgaacttaaattaaaaagacagcTTATATTTCTACAAAGCCAAGATGTCTAGTTTGGGAATTCCTTGTTCGACTAATTTTCGCCCATCCCCGAGGCGTTTTTCCAACAAGCCCGACAGGTTCAAACCAGGCCTTATCTGACTTGGGTTTCAGGTCCGATCGAGCACACCAGATTCTAACCAACCGTGCTCGTTTGTCCGTCAGAGCCATTAGTTAATAGCTCGTTTGGCGTCTCCAGCAGTAATCAATTCAGAGGATGTTTTGGCGGCTCCCCTTTTTCCTGCCTTCAAATGCCACATCCGAATACTGACATTTCAGGAGGACGGTTATTAAACACGCACACAGCTTTTACCTGTCTGGAGTGGGGCTTGTTTTTCCAAAAGGGCCAGTTCTCCCGTATTTAAATCGCAGCTTGACAAACATCAAACCTTCTTAAAAGCAAACCACACATCCAGGGCAAATTTATGGAGGAAACTAAAGCAAGATATTTTGAAGGAGCAGCAGGTTTCTATGTGAATGAAAAACCCTGACAATCAGACCACAAAATGgtggtttgtttagtttatttcttgAATCCAAATTTTGCCACCCATTCCTCAGCACTGTGCCAGACAGACTTAAATATTGTTAAGGTAAGTGAAagcctttaaaaagaaaaaaaaaaaaaaaaacataagttaGTCCTATATtcccattttcaactgactgcAACACATgtagagacacactgacagtctGCTGATGGCACCGTCAACTACAATCAAATGtatgaatcattaaaaaaaaaaaacaggtcagACAGTTTGTTAATCAGCCTGCAGCCATAAAAGATTCAAGACGTCCacctatttattaataattgagtGTCTCCGAATTCACCCATtgggaaaaactaaaagaatGAATGACAACAAACCCTAGTAGGTTTGCTAATAAATACTGATCAATTAGTAATTGACAAATGTATAGTATACTGAAGGAAATGCAGCAGCATAGTACAGGATGCATTTTAAActccttatttgtttatttcaaagctCAAACCCGGCCCCAGCcaaatgtttcttaataaaATCACGTGACAGCAGAATAGCTCTTCAGAATTCAGTTTCCAATAAACCACAGTAATCGTTTTGCTCctttaacagaaaacaaaaagggtcTCAAACCCccgttttatttttcactgaaataaaaatcgGTCTCCAAAATGTACATGTCCAGAACAAAACCAGCTAACGTTAACAGTTCCTCAAAAATATGTACTGCAACATCATCCGTTCCTCCTAAACACTGCCCACATGTTTCAAAATTCTGCTTTTATCATATCTTCAGTCTCTACATTAGAAACCTTGTGAAAGAGACTTTTCAACCTGCAGTCACCACCATCGCATTACGGAGTTAGAAACATAAAATTAGCTAAAGGCCTCAAAGCAAGAATCTGTTCAATCTTAATGCTGCCCATTAAATGCCATCTGTAACCTCCTTTACGGTTTGTTATGTACATCAGGACAAAAGATTGTCCTCAATTCACAAGCACAACCCACCCGTAAGAGCATGCCTGGACACATGCCATATAGGCTTCAGTGTCTAGTATGAAAAGGTGCAGTTTCTGGTCTTGCTTGTAGAACTTTagctaaaacaaatgaataaaaacaaatgacaataaataacaaaccaGGAGCTGAATCATTACTTCTGTGCACACCGCAATCCAAGCTCTCCTGGGCTTTGCGTCTGTCATTGTGCTCATGCAAAGGTCATATCACCCCGCCGGTGAGAAAATGactaacttttttatttttttccttcatcaTTGTCACGTCGAAACACTAATTTTGACAATAATGATTCATCAGGAAGTAGTGAGAGATGGGTTTCGGTATTACAGTTGAAAACATAACTCTTTTACTACAAAACGATATGTCATtgaccaaaaaaatatatatacacgtttTTTCTGAATGGCTCGCATTTGTAAACTTTAACCGAGTGGTGAAATGAGCTTGTGGTGCCCGACAGCGCACTCTTGCGAGACTCAAGGCTGAGGCGTCGAGGTTTTGTACGTTTAAGAGGGAACCAAAAATACACAGATCTTGGATGGCAGCCCTTCCTGAGTACATTTGAAATCAAAATGGCTTTTCGTGGCTTGAAGGGGAGAAACGATTGTTAATTAAAGCAAGTAATCTGGTACATCTTAACTGGCACCCCTAGCTGGGCTGTAGCATTCATTTCACAGGCTGCAGACAGAGAGGATCCGAGGGCAAAGCATGGAGTGGCTCAGACCGCAGGCCTGCGCTGGGCTGGGCAGGGCCACTGTGTCGTGGGGGTGCTCCCAGGCCAGGAGAGCGGGGGCCCGGCACCGATCACACCCCTCCTCAGTGCTGGTTTTTCCCTCCTTGCTGCTTGCCAGGTTTCTTCTCCTGCTGGCCTCGCCCGGCCCCTGGGATGCCCCTGCCACGCCCCCCAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196629 True 2875 lncRNA 0.42 2 15581857 15584766

Neighbor

gene id symbol gene type direction distance location
AMCG00006069 pgpep1,LOC103360783,LOC104958139 coding downstream 7170 15565462 ~ 15574687 (-)
AMCG00006067 upf1,LOC105907049 coding downstream 22508 15544838 ~ 15559349 (-)
AMCG00006068 NA coding downstream 52533 15496753 ~ 15529324 (-)
AMCG00006082 NA coding downstream 93176 15483162 ~ 15488681 (-)
AMCG00006079 arrdc2,LOC106573914 coding downstream 101539 15469241 ~ 15480318 (-)
AMCG00006075 NA coding upstream 188912 15773678 ~ 15776508 (-)
AMCG00006085 NA coding upstream 193441 15778207 ~ 15784001 (-)
AMCG00006086 NA coding upstream 204581 15789347 ~ 15818856 (-)
AMCG00006087 NA coding upstream 256146 15840912 ~ 15877424 (-)
AMCG00006116 comp coding upstream 416787 16001553 ~ 16012344 (-)
G156049 NA non-coding downstream 149927 15427308 ~ 15431930 (-)
G156048 NA non-coding downstream 158007 15417978 ~ 15423850 (-)
G156028 NA non-coding downstream 214216 15366104 ~ 15367641 (-)
G156014 NA non-coding downstream 251311 15272813 ~ 15330546 (-)
G156003 NA non-coding downstream 263680 15207520 ~ 15318177 (-)
G156113 NA non-coding upstream 30796 15615562 ~ 15615787 (-)
G156203 NA non-coding upstream 362442 15947208 ~ 15947527 (-)
G156207 NA non-coding upstream 410021 15994787 ~ 16000039 (-)
G156225 NA non-coding upstream 477967 16062733 ~ 16063072 (-)
G156228 NA non-coding upstream 481903 16066669 ~ 16071528 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other downstream 90215 15433432 ~ 15491642 (-)
AMCG00006102 slc5a5 other downstream 573878 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 797577 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 898877 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 1072243 14509233 ~ 14509614 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 369310 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 869518 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 920598 16505364 ~ 16521689 (-)
G156341 NA other upstream 1066774 16651540 ~ 16680772 (-)
AMCG00006127 NA other upstream 1363231 16947997 ~ 16963650 (-)

Expression


Co-expression Network