G156521


Basic Information

Item Value
gene id G156521
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17567559 ~ 17571532 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU197144
ATGCAATGAAAGAGACAAGACATTGAATGTGGTTCAAAGCGTTTATTTaaattcttttaaaaaatacaaaattctgGCAACAGTCTGTAAGAAATTTGCAACTCATGAACTGTCAGTCACATGGTACagtaaagtgcttttttttttttttttttttttttttcttcagttgatTTCCATTTCCAAATTCTGCCCTGCGGCTGCAGGCTGTTCTGGGGGAACAAACCAACTGTGCTACTTAATGAGGCATCACCTGTATGATCAGAGAGATTTGGCAGTCTTGGGACTAGTAGAACAGGCAGaattcacatttaataaaaataattaccaCTCCCTCCAGCCCAGTGGATAAAAGTTAAAACTTTACAAACTTTACAATCATATCTCTGTGATCATGTTCAGGCAGCATAGTTCGACTattgtgtgtatctatatacaTATGCCACCATTAACATGTAGAAAAGAAAGacttcaaaaaatatttaccaTCAGTATCTACCTTGAATAAATGTGTAGCTTTCTGGagatgtaagaaaaaaaaattgaaacccTGCTTCAGTTTTCTtcgtttttaaaacatttctttgtatttagatTAGAGAACATGATCCTGTCCAGTGCTACTatatacattagaaaaataTGCTGTGGATTCCAAATAGACTTGATCAATCCCTATTCCCCTCATATATGTACaggaccaaaaaaataaaaaataaagcaatggcGTATATAAGAGGTAGCACTGCTGTAGTTTCAAGACCCCAAGACAGATTTGATCAGTACGTCCTTTGTCTTTGTGCGATAAATAGACCGGTACGCCTTACATATTGAAGGAGTTATGCATAGCCAAGTACTGAGGAGAAGGGGTAGGGTGAAAATACTgaatcaaatacatattcaacCAAAGACCACCAAACCAAACTTGTgcctttagtttttttcattttttttctttgcacaaGGTAGTttccagaacaaaataaaaggaaacaactGCATATACAATTCAAGTAAGTCTTAGTATAAGACATAAAACCCACGAAATATGTATCCGTagaaagattacaaaaaaaggTTACAATCAGCGTCCTATTATAGCCTTCAGCTTAAGAAAGGGCAAGGTGGTTTTAGTACCTTAGAAATGCTGGTAATGTTATATTGACATTCATTCAATTTATAACAGGAAAACAGACTTGGGCAACTTTGGAATCCTTGTCAACAAAcagttacaaaatgtatttgaatggtgTAAGCTAAGGAAATGCAAAAAATTAAGCCCACAAGGAAGACAAGTCAACTTTTACAAGTGAGGGGAGCAGGCTCTTTTAAAAGCCATCCCAAAGCTTTCATTCACTAAAGGATTTACTTTTTGGCAgcagtgattaaaatattttagttcCAAAAAGTATCAGTTGCCACAatgaagaggggggaaaaacaattTTTCCCCAAAACATTTTCCTCCAAAAGAGAACATTACCCAAATCTttacaactaaaaataaaataaaaatgccttttacctttcattttttactttttcttttctctcaaaatatgttaaaatacataccCTGTTTTCTCCCTCACTCACATCCTTTTGCTTTCAACAACTTATGCATCATACAACCACTAGAACATATTCcatgacaggaaaataaaaccagacaAACATATAAAACTAAAAGCATCCAACATCATACCACCTGCACAAATACATAACAGCACctgctttcaaataaaaacaaaaaataaaaagataatacaACTTATAAAACTGTGGCACATTTTGAATCTTGGAGTTatccacacatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtaaacattaaaaattaaaacatttctttcattttcacagacCTATTTTCTTGGAAGATcattcttaaattatttatatttttaatgcttttggaatgtttttttttttttctcctaaagATTTTGTTGTGTGCTTGAACatgctttttcatatttttttccaagctTCCACAAAAAAAGCACTGTGATATTTATCTCGGAGATGGCCATAAACATGACTGACTTTCCAAAAGCCTGAACCAACCCTAACTGGCATCGTCTCCCAGTTCAGATGGTACAGTAGGCTTGCTAAGGCATGCAAGAGCCTGGAAGGAGGGAAGAGGCCCATTTTAAACAGTTACACTGTGGCGACAATGAGTGCAATAAACAAGTCAGCCATGCTGCTCAGAGATCATAGCAGACCCTAAGGAGGACTGGATTCATTTAGGTCTTACTACAAGAAAACCCCAGTTTCAGTGCATGGTTTTCTTTTATGGaaagccttttaaaaaataaaacatccaagCAACCTTTTTAGCAGGTATACACCATCTTCTCCCCTTGACTGATTACAAGAAGTGAAAGAAGAATGATTCCAATGTAGGCTCTAAACTTTGGAACTCAAGCACActagggtgttttttttttttttttttttttgtatatacaaatattctaaatatttatCAAGGACTGAGCAGATGCAAAACGTATCCTGCCAAGTGGAAGGCAAACCATGCGTTTtggtaatgtgtgttttattttacgCCAGCAACCTTTCCATGTCCTGTCCAAGGcaggttttcaattaaatggCTCACCCTAGATTTGCCATATTCCACCTGCCCAAAAAGACTATTGCTACAATGAAATTACACTGAAGTGTGTGACctgcagaaaataatgtaacttaGACTCAGAGAAATTACAGAAACCAAACTTCAGTTTCCTTTCATTCCATTAGGATTACGATACCTGATGTGCCCAGAATTCGGATTCTAATTTGTGCCAGGGCAAAACACTTGTGTTGCTGGGACAAGTATGACAATGCACCCACGTGGAAATGCTACAGTATTCAGGTCAGTTCAGATGTAAATGATCAGGACCTTGAATTTAGCCATTCTCAATTCTTGCCTCAAACCTCAGACTTGCGGAAATAAATTGGGCTCAATTTTGAAAGGGGAGGTGGGTCTCAATTGGAGATTCAACTGAATTTGTAAGTCTTTCAAGAGGTTTTTGGTCACCTCTAACAAGACATGGGAGACTGGAAATGGTTAAAGCTGTAAAGGGAGCATTGTGGAATTTCACTTGGGGTACACTGGGATGTTCCAGCAACACAATGGTGTGTGTTCAAGGCACCAGGCACTTTGACAGCACTGATTACCAGTGGGATTTGCTGAATCAATGCCAGAAAATCCTTCATTGCAATGATTGCATTAAACATGTACGTATCTGCAGATGCAGCGTAGGTGCAAATACATACAAGTGGAGAAAAAGGTATTCCtgatgatttaaattaaattaggaaATTCACAGTGGATCCAGTTGTAATACTAGAGCAGCAGAAGAGTTGTCCTTTGGTGTCGCAGTCTGAGCTTGCGTGAATCTTGCTGTTCTTGCCCTTAAATTGCACCCCCAACCCAACCCCAGGGCCATTATAATTAAAGTCCAGTCAAATGTGCTTTTGAATGCCAAACATGTTGGAGACGGACTTGTTTTGGGGGGAAGGGGtggattatatataaaattaaatgaagccAATTTGGGGGAGGGGTGAGTAGGAGGGTAGGCAGGGCTTGAAAACAAAGATCCTGTTGCTATTGGGGAGTCCTGAGGGAAGAGGGGGGGCCTCACACACAGTTGCCCACAATGACCAGTGGGGCTAGGAGCTGGTGGAGTTCTGTGGCTGACACTGGCGCCCCCTTCAGCAGGCTGTTCCTCTGCCGCCGCTTGGCCAGTCGGGATTGGGAGGGAGGCGAAAGCCGCATGGAGCATGAGGTAGCCGTTACAACATGGGGCGGCTGGTCGTCAGTGTCGCTCTCCTCCCGCTGAGCAAGCTGCCTGTTGACTGCTACTGCCTCAGCAGCGAAGAATGTCAGGTCCTTGGCACTGCTGTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197144 True 3954 lncRNA 0.39 2 17567559 17571532

Neighbor

gene id symbol gene type direction distance location
AMCG00006136 NA coding upstream 48726 17511902 ~ 17518833 (+)
AMCG00006150 NA coding upstream 446054 17104337 ~ 17121505 (+)
AMCG00006151 NA coding upstream 465698 17095682 ~ 17101861 (+)
AMCG00006130 NA coding upstream 491295 17070040 ~ 17076264 (+)
AMCG00006125 dapk3 coding upstream 649579 16908516 ~ 16917980 (+)
AMCG00006191 NA coding downstream 217451 17788983 ~ 17811459 (+)
AMCG00006189 thop1,mepd coding downstream 280507 17852039 ~ 17877059 (+)
AMCG00006187 NA coding downstream 308451 17879983 ~ 17905624 (+)
AMCG00006162 LOC106613602 coding downstream 376991 17948523 ~ 17960210 (+)
AMCG00006164 NA coding downstream 433045 18004577 ~ 18008371 (+)
G156509 NA non-coding upstream 20198 17535631 ~ 17547361 (+)
G156506 NA non-coding upstream 42809 17523234 ~ 17524750 (+)
G156440 NA non-coding upstream 225403 17332536 ~ 17342156 (+)
G156430 NA non-coding upstream 395779 17159577 ~ 17171780 (+)
G156329 NA non-coding upstream 922710 16644447 ~ 16644849 (+)
G156564 LOC100846954,LOC107575789 non-coding downstream 136138 17707670 ~ 17708721 (+)
G156567 NA non-coding downstream 203133 17774665 ~ 17777870 (+)
G156598 NA non-coding downstream 270607 17842139 ~ 17843976 (+)
G156671 NA non-coding downstream 587308 18158840 ~ 18223148 (+)
G156769 NA non-coding downstream 1171070 18742602 ~ 18749749 (+)
AMCG00006149 NA other upstream 439926 17123205 ~ 17127633 (+)
G156327 NA other upstream 938377 16627793 ~ 16629182 (+)
AMCG00006089 NA other upstream 1422321 16123128 ~ 16145238 (+)
AMCG00006113 slc35e1,LOC106573890 other upstream 1500661 16054035 ~ 16066898 (+)
AMCG00006111 smim7,LOC106573893 other upstream 1531590 16032892 ~ 16035969 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other downstream 90658 17662190 ~ 17735084 (+)
AMCG00006190 LOC107695212,LOC107676806 other downstream 174601 17746133 ~ 17764228 (+)
G156640 NA other downstream 402209 17973741 ~ 17980637 (+)
AMCG00006138 NA other downstream 618692 18190224 ~ 18356589 (+)
AMCG00006174 NA other downstream 906596 18478128 ~ 18480087 (+)

Expression


Co-expression Network