G156670


Basic Information

Item Value
gene id G156670
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 18138519 ~ 18144775 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU197320
cacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatattaaataggaAGACTATTGCTAGAATCAAATGCTAGAACATCTCACATTGAAtacaaaaaatcaaacaataataataataattcataatagtgaaacaaaaattaaaGGATGCTTCACAGTTTTTGTCCTGCCATCATGCTGGCATTAGTATACTGTTAGATACCAGTGGAGACCATGCTGGGTAAGGTTCTGAGAGACAAAATGTATCTGTGGTTTCCCCAGCCATCTCTAGAATTATGGCACCAACTGAATTCTAATTGGTGACCCCCCAAATCAACATCACCGATACCAGAAAAAGACAGATTGTGACAGTGTTCTTCAAACCTGGTTGTGGAGACCTGTTGGTTTTAATTCCACCTGAGATCCTAATTAGTTAACTAAGCCTCTTTCCTATATCTAATGCAGGTGATGATTTAAAGAGATCTATAAAAACCCTATAAGTGGCCCTCCTGGATgggattttaatatttctgcaCTATGAGATTGAGTGTGGTCCcctttttacatttcctgataTAGACTTCCTGAACTTGGTTGTTGCCTTTTAACTACAAGCAACCATAGAGATCCCTCAGTACAACCCAATCCCCAAGGCAAAATTGCCTTTTACCAAGAACAAATTACCCATCTGTTGATAGTGGGTAAATTTGCATATGACTGAGCTGTGCATTGGTCAGCCAGGTGAGACAGTATTCTGGAGGTCATACAGGGTGAGTCACACACTTAGAGGGTAGTGaaaggagtggggggggggggggggggggggggggggtcaggaCAGGGTTTAAGATTTTCCCTTGAActgaaagaaattaacaaatacattatcaaaCCTTTAGCAAGACAAATACTGATGTTGAACTGCAAGTGCATGGCAAACAAGGTTCTCCCACCAGCTGTTTTACTTTACTAGAAAAGAAAGCATATTAACATTGATattcgttattattatttctttgcgGACACAAATATGTCAGTCACCTCATCTGTCCTCTGGTAGGCTATAAACGCGTGTAAAATTACTGTTTCTCTTCCAATCACAGCCAATTGTGTGAACACTTGACAGCAGTAGGAAATGGGGAACAGCTGATTGGAGTGACTTGTTTGTGATGTACAGTAATTAGGCATCAACATTCATCTTAGCTGAGGTGTAATAGTTTGTGTTAATTTCTtccagtttacattttaaaacctgccCTCTTTGAAAATGCCCTGGGGATTATGGAACCATATGGTCAGCCTAGCTAAAGGAAATTTTCCACATTTAGTGTTGTCTACCTGGTAAGCAAGACAGGTCAAATCCCCAAAGAGGATGCAGACCCAATTGCCTAGAGATTGGAGAATCTGGCCCATGGGACTAGAATTCCggttggatttaaaaataaaatgagttggccgttgttaattttatttatatttgataaaagaaaataaacaatatatagttttatatactCTACAGTTTTATAtagtggtgttttgttttttggacaaCATAAATTAGGCACAGGGGAAAATGGTACCTGCTTTAATCGGCAACACAGTTTCAAGATACAGGAGAAGGgtttttgtgcattttgcaACTAGGGCTTGGTAATCATTTTTCATTACCCTCTCGACTTGAAATGTCCAGCATCGACCCACTGTTACCCGAAACACGTATACAagtctgttttagttttatttacatCAGAGTAATGCAAAAGGAATTATACATGATTCTTGCAGAAGAGTGCCTTTTGTTAAATCCAAAAACCCAAACCAGAAAGTATCTTGCTTCTAAGTCAGCTTGAAGCTTCTTATTTACCTGACATAGTGAAGCAGGATTCCTTCCTTATGACATATCAGGGCATAAAGCATAAAGCATTTATTAGTTAGAGAGGTATAAGCAATGTATATTCCTCTAGCTTGAAAAGCAATCTAACTAACCTTCTTTCCCCCTTGGATCACAGTAAGTGTTACATGTAGACatactgacaacattttttgttgaGATTCCCAAACACCTTAATTTGTGATTCTCTTGTGTTCTCAAGTGGTTTATTTTCCTCAATTCAGGTACatcatgaaatgaaaatgcatttaaaaactattcTCTTCTGAATAGAAGACACAGCGGTGGCTAATTTGTTTCACTTGTTCGTTTCTATGTTTCCTGCATTAACTCGATTGCAGAATTTTGCTAACATATGATTTCCATGTTCCAACCAATGATACATGGTCACACAACAGTACCCCCTACTTGTCAGTGAGACAAATAAAAGGTTGGATTCTTGTTATTATGTAGTTTCAATTAaagaacactgacattttaaCATCGGAGAAGGCTCACAACAGAATACAGCAGTATCTTTGGAATCATCACTATCAACAAAAcatttagtgttttaattttgttcttgtttaaatGGTTCTCCTACAGTTATGTTAAACACGGAAATCAAAAGAAAGATAACaatttacattgtaaaaaaaaagtggagGCGGTGAGTGATGTTGTGATTGTCTCTGggtttattttagtaatttgttttgtattttcagcAAACCCATGTTAAGCTTATAAACAGAGCCAAGCCACAGCACAATACTTTAGGTGTGACAATagaggctttaaaaaaatgttggaaTCTAAAGATAGTAGCAGAATGAAAAGGATTAAATAATGTTCAAATCAGGCAAATTAGGCATTTTGATCTCTGTAAAATGCCGCCTTCTGAAATCATGCAACAGTATTCCAAACAGGGGGAAAATACGTCaaacctgctttaaaaacacaaaaacaaaaaccatggCAATTAAATTAATCCTGTCATTCGTGtggtgtctttgttttttttttccaaacaaagTAATGATTCGCTTTACTAGTCATACACTTAAGGCAGCCATGAGTCCTGTGTGGGAACAGTGATGACTAACACCATTACAACTCCCAATGAAATCCACgcaatggaaaataaagacatttagaaGGTAccctgaattaattaaaacatgtcaaaatGTATGAGGGCTGGATCTGCAaaatcatataaacaaaatggGCAACACTTTAACTTAAGGGTTGCAAATATCCCTTTCTAAATGTttcataaacatacatattagcacagaatgatacatttattaaacatatagGAACAATGTGCCATTTGGGCATAACATACAAATGAATGGATGTCAGTTAGTACCTGGTTCATAACGCACTGTGACTACTTTAAGATGTTCTAAATTATGAAGCACTTATACATGCCATTTGCATCCTAATCTAAAGTATTACCCCAAAATGTAATGGACAATTTCTTAAAGGGAGACTATATTTCTGGTTAAGATTAGGGTGAAGCTGCCATTTGTAGCAGATGTTAGGAATAGGTGATCTGCAGTGAGACTGAATATCTCtataaaagaaaagagaaaacttaaaaaatgccTACTGTTGGATTGGGGAGATCACAATAGGATCCATTACTTTTTAGAGGGATTCTTTCAGAAACTTGTTAACTGTAAAACATTGtaagtgtgtttttaatatatacaaatgtagcTGAAtatattcacacccttcatttgaaacaacaagattcagtgattcatttggtttcataaattattattattattattattattattattattattattattattattattatacatttcttagtagatgcccttatctagagcgacatacaaaacataagtgTAAATATAGGTAGTTAAAGCATGCACAATTATACATTGAAACAATAGTAGTCAGTGAGTCATTtggttgaataaatattgttaaagtaTACTTGTGTAGAAATTATATCGTCTCAGAATTTTCAGAACCCTAATTCAGCCTTGAGAAGATTGCAGATGACCAAATTGAGTTAAGACGGATGGTGTGTAAACTTTGGACTGCTACTTCATTGATTTCTACTTACtaaatttatttgaaaaatattgtttcaaatgaaggtcTATACTTCAGAAACTTTGGGTGTCATTAAAAACTGTAGGGAAAACAAGATACATAAAAGGATCAAAATCACCTCAGCCTTAGACATCAGTATATTTACCCTTTTCTATTAACCTGTTCGTAAGTATGTTAGCACATGAAAGGACTATATCCTAATTACACTGTGCCTTAGCATATAAAcgcatatatataaatatctacaGATATCTTTCATTATTACAAATTTCAAACATATCTTGAGGGTACATATATCATTAATAAACTCATACAGGTTCATGTATGTGGGTGAAAACAATACATCACATGAAAATGAATCAGACTTTTCAGAGTTCACACAGAtttgaaaaaactaataaatactgGTCTACAAACTGGATAGCTGtgctaaataaaatcaattttaaggGCTTTCCCAGCAGTAAATTTATGATAGCCACATTCTGCGTGGTAAGGTTATAGTACAGGTAATAAACTATTGCTTGGGATCACACTAAACaaaattgtgctttttaatttttgcaaTTGGAAGTCAGAAAAGCTGATTTCTCTTTGGCTGCATTCCATTTAAATCTTGTGTTAGTCAGATGAAGACACTTGTACTCTACTTTTGTATTAATCAtgagcatgtttgtttttcattttcttaccATTTGCTGTGAGCTCTGAACTGTtgtcagtgagagctgcatcagTCCTCCCCACagaactatatatacagtatctgTTGTTTGGGTTGTTTGAGAAGAGGCAGGTGGCCTGGTAGCACATGTTTCTgagtacatgtatgtgtgtgtgtgtttatgttagCACTCGCAATCCCTCCTCCAGCACATAGAAGTGAACAGTGAGCAGATTAACAATTAGCATTTCCCAAATTTGAGGTTTTAAATGCTGATTTTTGCAATATTGTGGATttataaaaactattttctttttaaatgatttagacaCACATATTGAATTTTTAATTGTCTTACAGCTGTCACTTGAACCATGTTGGGCAGGCGTTGAAACCTTTCAAGTATTTGTTTCAACAGAATGATATAAAGTGCTTTGTGACGAAGTTAAAATTCTGAAACCAGGGTGTGGCCTCAGTTAGGATGAAAACATTGCCATTGAagacaagattttttttccaatatgaatattatattaaatgctatatatatacagacgggtgacaaattaaaggcaaaacctgaataaatggaggaacataacgaatgcagatgcctccaaagaagtgtactgcatgatacaattaagcaattaacatcctattatgctctgtggcatgtataaaaacactgagcaggcccagttgacctcgattttggatcaagatggcaagaggaaagtgactttgaaattggggtcattattggggcacgaatggcaggagcttcagtcacaaagactgctcaactggctaatgttcttgacaagtgggtgagtggatgtgtggcgacaccaagagaataatacaggcctgactgcttgacccctataGTGAGGGgatctggaggctctgttatgctgtggggggcattttcctcgcatggtttgggtccacttgtccccttagggggaagggtcactgcaaatcattacagagttattctgagtgatcacctttattctatggtgaaacatttctatcctgatgggagtggtctcttccaggatgacaattcccccatccacagggcacaaggcatcactgaatggtttgatgagtatgaaaattatgtgaatcatatgctatggccttcgcaggtCACAAGATcgcaacccaattgaacacctattggagattttggactgacgtgttaggcagcactctccaccaccaccatcaaaacaccaaatgagggaatatcttttggaagaatggtgttccatccctccagtagagttccagagactcgtagtaTCTATACCAAGGCACATTgcagctgttctggcagcttgtgttgacccaacaccttactgagacactttatgttggtttttcctttaatttgtcacacgtctttacatatatatatatatacatacatatatacacacacacacacacacatacatatacatatatatatatacacaaacacacacacatttgtatacacatgtacatacatacatatatcctTGGATTGATACATGCACacatctacactcacctaaaggattattaggaacaccatactaatactgtg

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG:

id description
ko04911 Insulin secretion
ko04727 GABAergic synapse
ko05032 Morphine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU197320 True 6257 lncRNA 0.36 1 18138519 18144775

Neighbor

gene id symbol gene type direction distance location
AMCG00006165 NA coding downstream 106350 18013807 ~ 18032169 (-)
AMCG00006163 LOC101062949 coding downstream 140448 17984542 ~ 17998071 (-)
AMCG00006192 NA coding downstream 204134 17906040 ~ 17934385 (-)
AMCG00006135 sgta,LOC107656077 coding downstream 286548 17835894 ~ 17851971 (-)
AMCG00006134 slc39a3,LOC106573935,LOC106613601 coding downstream 312287 17817521 ~ 17826232 (-)
AMCG00006140 gadd45b,ga45b,LOC106573930 coding upstream 296687 18441462 ~ 18444082 (-)
AMCG00006159 rfx2,LOC106584375,LOC106613840 coding upstream 492722 18637497 ~ 18668381 (-)
AMCG00006158 mllt1,LOC106584372 coding upstream 605059 18749834 ~ 18762648 (-)
AMCG00006160 mllt1,LOC108432507 coding upstream 630150 18774925 ~ 18780393 (-)
AMCG00006171 NA coding upstream 669642 18814417 ~ 18821406 (-)
G156668 NA non-coding downstream 1014 18132329 ~ 18137505 (-)
G156378 NA non-coding downstream 1215656 16865098 ~ 16922863 (-)
G156344 NA non-coding downstream 1462472 16674798 ~ 16676047 (-)
G156228 NA non-coding downstream 2066991 16066669 ~ 16071528 (-)
G156225 NA non-coding downstream 2075447 16062733 ~ 16063072 (-)
G156696 NA non-coding upstream 288831 18433606 ~ 18434245 (-)
G156716 NA non-coding upstream 387287 18532062 ~ 18532447 (-)
G156717 NA non-coding upstream 388408 18533183 ~ 18538243 (-)
G156791 NA non-coding upstream 596576 18741351 ~ 18742209 (-)
G156812 NA non-coding upstream 696026 18840801 ~ 18843916 (-)
AMCG00006127 NA other downstream 1174869 16947997 ~ 16963650 (-)
G156341 NA other downstream 1457747 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 1616830 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 1676354 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 2181429 15954076 ~ 15957090 (-)
G156907 NA other upstream 1130425 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 1304156 19448931 ~ 19463205 (-)
G157059 NA other upstream 2565024 20709799 ~ 20712216 (-)

Expression


Co-expression Network