G156812


Basic Information

Item Value
gene id G156812
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 18840801 ~ 18843916 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU197489
tcaatttataacttttttgaaatatgtttttctggactttttttgttgttaatctgtctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaatgtacaaaatcagcaggggatcaaatacttttttccctcactgtacaataaTGTGGGAAACAGTGGTGCTtaaatttattatataaatgaaaaggcacaaagaaaatgaatcaaCTATCTtgatgtaaaaaagaaaaaaaggtgaGACTGCAGATCAAAGTATAGGCCACTACAAGGTGGGAGAATTCCCTACCATGCCTAGTTTTACAATGTAATCCTTGTTTACTGTGCACAGATCTGTCAGaggaacttttatttttattttctgaatttgtttttataggaaatctataaaacaaaaatcctatAGACTCGGacagctgtttttctgtttctttgtcATATTTTTTCTACTTGTATatgaaattttattttttggggaaaagctggttttgaaaatgattaCAAATATGCAGTCTCTATTCTCATACTACTGACATAGCACACCACCAGACATTATTTTGAGAACTCTTCCCAGCGGAACTCCAATTTATTATGCATAGGTGATAGGTGTCTTGTGgatgttttattaatagttattttaattatcaaaatGGATGTGTAGTTCACCCATAGGGTGACGAGTTTCTAGCATTGTGGCCTTGAAGtacaatgttcttttttttattattttttaaatttaaattaagtattgtattttcaatatgCAACTTATTAAGTCAGTTACATAGTACAGGGCTCAGTAGAGAGGTCTAACAAAACACAAGATATAGCATAACTTGTAAGTGCTCAGTTAGAgaagtaaaaatattttctgtggtCTCTCACACTAAGAGGCCaagattacattataatatgtGTGAAAAGatagtatgtattattatttgtatttattggcagatgcccttatccagggcgacttacaacataattgcaaaaatacGGAGAAGTACAAAGTATGTAGTacgagagaggaaaaaaaaaaatctgcagtgaTATCACAGTGCTCATGTTAGTTTTTCAGAGGTTGCAAAGATATGATGTGCAAGTGTACAGATGCATTGCACAGTGGGTCTAGTATTGTGGAGGACAGAGCTGAGTGTACCAGGTGGTGTAAGGGAGATGAGAACAGACTGATCATTTTGGGGTTTCTTGtttgatttgtgattttttttttcaggctaGAGTGAAAAAAGTCTACTGAAAAGATTCCTTGGTACATGAGAGGAAATGAGAGGAAATGGAGATTAGGCGGTTAGGTCAGTGGTGCACAGACTCCTGAAAGGAAATACAATTGTCTGTAACTGTTGCTAATTGTGTATAATTGTGAAATTGAACAATGATAGGCAAGGTTTGAATTGGGTCAAAGAGCAAGGAAACTCATGGCAGTGAATGACAAAGCTCCGTGCTTGTTTTGTGTCCACGATGTATTTAATagattgtgatgcatttatagCTTGATTTGTAAACTTGATTGATTGAGTGTGAGGGGGAGGAATACAAATCTTTTTtgaattttattattaactAGGACACCAAAAATGCTCTTGCCTTTGCTGTATACCTTTCACTTTCATGTGAGTAAAAGATGGTGAAATACCAACCATAGTTTAATGAATGTCCTTTTGTAAACTCAATATCCAAGAGAGGAAAACATTACCAAATGTGGTGTGTCTAGGCTTATTTTTTGGGGCTATTTTGCTATTCTGTTAATTAAATAGCCCATCTCATTATCTTTCTTATTAGTCATTAATCATTAAGTTCTCCCTTATCACACATGTTAGAGGGTTTCCTTTTTGGTAGGTTTTATATTTGTCTGtggactttttcttttgtaaaggTCAgatatgtaacttttttcattcAGTAGGTAAATTGCAGCTGGAAGAAGTTAGTGGGTGTAAAACCACTAAACCAATGCTTTTTCATAATTAGAGGCACTGcaaataaatgtctttaataCCGAGCAGGTATTTATTCAATGGCACATTGTAGTACTGGCAGCGACCAGGACAGCACCCTATATAAACCTTCATGCAACCCCACCAGAGTGTCTCAGTATCCAGTGGAGAAAGGACAAGGAGGtcgaaggagagaaaaacaaactaataccCTGTCTCAGGGTATTTGGCAACGCTTTGGCAACGACCTCTGACCATGACTTTAACCCTGAGTGATCCTTACTCCGGTAAAGTGAACTTTCAGCTTATGAACTATGACTATTCTTTTGTATTTGCGATCTGgacctgtttgttttgtgttttgtagttttcattaGCAGTTCATGGTAAGAGGGGGATCTGTTTACACTGTGTAGGTGGGCTCAAAAGGggttatggttttgttttatttgtttacaggGTTCTGTCTAGGGTTTTGTGGCAGGTCCCGATCTAATACGATAAGTAACTGCCCTTACCTGTGctttatctatatctatctatctatctatctatctatatggtAATATGAAAATTgttcaggggtctgaatacttttgcaaggcactgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtgcgtATGTATATGAAAATTTGATTTAGactatttcttgtattttaataaaagtttcattttattgaataacaacaAGTTTCAACACTACTGTATCTTCGTCATGAAGGGAGTTTTGGGGTCCTGGGGTGATACTGAATAATCCTAGAGGTTTCACTTGATCTGATGTTATCCCACTTCATTGTGTGAAGTAGAACAGCTAGCAAGAGCAAATGTATTATGCGGAGGGGACCAGGCGATCCATTGTGGTCAGGGTATTGgattatcttttgaaaatgaaaaacaaaaatgcttttacaaaatactttgaaaaaaGGTGCCTGCCATACACAGAGCATCATAATTGAACAGTACAGCAATGTCATTAGTGAAGtaaaaagtattatttcttcttactaaatatatattcttccaCGTAACATGATTTAAAGTACTATCTTACTGGCTAATCATATATATtgaagattgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU197489 True 3116 lncRNA 0.35 1 18840801 18843916

Neighbor

gene id symbol gene type direction distance location
AMCG00006171 NA coding downstream 19395 18814417 ~ 18821406 (-)
AMCG00006160 mllt1,LOC108432507 coding downstream 60408 18774925 ~ 18780393 (-)
AMCG00006158 mllt1,LOC106584372 coding downstream 78153 18749834 ~ 18762648 (-)
AMCG00006159 rfx2,LOC106584375,LOC106613840 coding downstream 172420 18637497 ~ 18668381 (-)
AMCG00006140 gadd45b,ga45b,LOC106573930 coding downstream 396719 18441462 ~ 18444082 (-)
AMCG00006161 myo1f,LOC108413823,LOC108264988,LOC105011638 coding upstream 9777 18853693 ~ 18887143 (-)
AMCG00006166 gipc3,LOC106574151 coding upstream 237123 19081039 ~ 19116587 (-)
AMCG00006184 LOC108437281,LOC105889513 coding upstream 395449 19239365 ~ 19269061 (-)
AMCG00006199 NA coding upstream 458744 19302660 ~ 19306140 (-)
AMCG00006195 LOC102214220 coding upstream 980909 19824825 ~ 19859369 (-)
G156791 NA non-coding downstream 98592 18741351 ~ 18742209 (-)
G156717 NA non-coding downstream 302558 18533183 ~ 18538243 (-)
G156716 NA non-coding downstream 308354 18532062 ~ 18532447 (-)
G156696 NA non-coding downstream 406556 18433606 ~ 18434245 (-)
G156670 NA non-coding downstream 696026 18138519 ~ 18144775 (-)
G156846 NA non-coding upstream 111807 18955723 ~ 18956035 (-)
G156847 NA non-coding upstream 112187 18956103 ~ 18956315 (-)
G156862 NA non-coding upstream 188214 19032130 ~ 19032334 (-)
G156929 NA non-coding upstream 546161 19390077 ~ 19390399 (-)
G156932 NA non-coding upstream 555518 19399434 ~ 19399637 (-)
AMCG00006127 NA other downstream 1877151 16947997 ~ 16963650 (-)
G156341 NA other downstream 2160029 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 2319112 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 2378636 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 2883711 15954076 ~ 15957090 (-)
G156907 NA other upstream 431284 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 605015 19448931 ~ 19463205 (-)
G157059 NA other upstream 1865883 20709799 ~ 20712216 (-)

Expression


Co-expression Network