G156868 (elavl1,LOC105889513)


Basic Information

Item Value
gene id G156868
gene name elavl1,LOC105889513
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19238192 ~ 19241844 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU197558
ctttgaaaaacagtgtctgactttttatttaaaataattccatgTTAGACAGTACAGTTTTGAACAGAAAGATacctcaaaataaatatttatccaaaacaaaaagtcaagaAACACTAAActaaatttacaaaaaaaataaaatgcataaccATATACAATATGGGTAAAATAAAGCCTTCTGGTCCATACTCAGCAAGCAGGCAATGCACTGCCAAGTTCCTGATCACTCTTATAAATTAAGGCTAGAAAACAGAAGGGTGGTGCACTATATTAACTCCAGTTTAATACCtttaaaactcattaaaaaaagacaaaggtGCAATATTAACAGAAAGCAAAAATGGAAGCGAGAAGCGAATGATCTTgggctgaaaaataaataaaaccacaagacgtggtgaaaaacacaaaggacTAATATCATGCATTAAATTCACTGCTCACTTCCGAAGAACTCATAATAAACTAGAATAATGCATCTGATTAAAGGATctctttacaaaattaaaaataaaaagggaccaAACCGCATTTACAAAGGATTAATTTGCAGGTTTCTACATTGAAATCGGACGCATCTACTGGTATGATTATGCCATCTTAACAACGCAGTAAATTCTTAAATAAAGAGACTAATTCTGAACTGTGCATTGGGTCAGATTTGTGTAGTGAGGTGAAGGTGGCATCAGCACTAACAAATCCCAATTGTTTTAGATCAATGGGGGAGTGGGGCAAGAAAAAAACTCGAAAACATTCACGTTCTCTTACAgttctttaaatacatatggGAGAGACTTAAGGAGAATCAATTACAAGGAACAACAGGAAAACTACTCAACACCTTTAAAAGACAGACAATGTACTAACATACAATCCAGttgattttgattaaattgGCCTAAAAGCTAGAATTTGCCATAAAGTActctgattaaatcaaaaagtgTATAAAGGGGATCAGGTTGAAACAAGTGCACAAACTCATTTGTGCACTTTTCAGGATATACCAAGTCATTTCCTATTTCCCACCACAACCCCCTCCAAATTAAATGGCTCACACAGAgcaaaagcaattttaaaataattggaatagtttaataagtgtgtgtatatacattatatatatatatatatatatatatacacatacacatacacacacacacacaaactttttAAATCCTCAAATTGGGTAAGTTAAAATTTAGTCATGTTTGAACTactttgaaaaagcaaaattaaaatctaaaatgtaataagCAATTCATTCagtgttaaaaaatgcatgattgGGATACCAAACTTTAGCAATGGACTGGGCAGAACTAACTCACATCCCAgtagctttatttatttgcaaacacTTTCAAATCCTCACTTCCAAGGAAAAAGTAACACGTCCGCCGTTTTTAAGCATCTATATCCTAGTCCAATGACAATTAACTGGAAAGTCTCAATTGATAATTGACAGACTGTAAGGTCTGTAGTAATTACCAATAAGAAACCTGACCTATAGTGCATTTGGGACACTGGAAATCAAGTCGTTCAAGGTCAACATATTGGCATTTCAATGGCTGAAGCTCAACGTAAGGGGAGGTACCAATTTTGGTTCTTCAGAGTTGGGTAAAGACTAAATCCTCGTGTGTGGAGATCTACATCagatttagaaataataaaaaatataaggCCTTCTTACAATTATTGATAAAGGTCTTCTTGGGTGGAAATTGGTTGGACTGGTTTAGGAActtaaactatacattttataaaactaaaataaaagccaCAGGGTTGTGGAAAAGGGAAGAACAGCTGTTTTTACCATCTTTCTGCACTTTATCCTTCCATTGATTTTTGGTCCTGCAGTAAACACAGAAATCTTCGACTTTCTGcttaatattttccttattgAGGCaaaggtacatttaaaatactatttataatCCCCTGCAACAACACATACTGCCTTTAATAAGGGAAAGTAAGCCGCTGGACTGCGTTCTCCACTTCTCCCGACTACCACAACATGTGTGCTGCCTGTTCAGGTCAAGGACCATGGTTGATTATGTCCCCATTCTTCTGCTGGCCCTCTAAACACCTAccaaagaaataaattaaacaaaaccaaaagagcaaagaaaatgttaaaccgaaaacaaaaaaccaaacaaaaatgttcagcaaaacaaaatcaaatttaatgatcataataaatgcaaaagtaaaacaatcaaacaaaacaaaggaaacacaaaaaagcaaaagaaaattaaCATAACCAAAATGTCTCAAGGCAGTTTCCAGAAACTTGGGATtagttttaaatctattttaaacaaagatttTGTATGTTAACAACTAAACTgcatggaaaaagaaaaaagctgaagtactttattttcagttttctcaaTAGAGAATCAATTAACATAAAGccctatttaaaacaaaataaaatggaaccAGCTAGAAGGGATGCAGTGAAACTCCGATGCTCAAATGTTTGTAGCAGAAATTAAATTAGTACCTATTCGCACTGTTGAGACTCATCTCTGTGGGATTTTGCATGTCAGGATTATCTCTGGGGCCTCAAATAACCCTCTCAATTTAAGTTCTTCCATCTTTGGTCCTTCTGGAATAATCTGGATCTAACTAGGTCCCTTTCAAAATCGAACTTAAAACAAATGATCTCGCTGGCTCCAATGCAATTTCCTAATGCCACACCTCCTTAGGATCTGTTTAATTGAGCAGCAGCATGCTGTGCCTTCACAAGAACTCTGATTCCAGTATTAGTGGGAGATCTTTAATCTACCAAGGTCTTGGTAGTTCACTTTGAAACTTTCACGTTAAGTATGTTTTGGGGGAAGAGGGGCAGATGTGAAGGGCAGGGTGGGGAGTTAAGGCATCTGTAACCTGAACCTATATCCAGTGTGAAGAGTAGCCAGACCATAACTAATGACAGTACAGAGAGAATCAGAGCCTTAGAGACATCACATGCTGTGTGTTTACCATGCATATGGCACATGTATAATTCTGTACTCTAGCATCACAGACggacaaattaatttaaaaactcagAATTGGTCAATAGGTTGTGGGATCtctcaaaaaacatttgaacacgTTAGTTGCATCCCAGAGTATCAAAAAAATCTTCCTACACTTTCCTATAGACTAGGACAAAGAAAACACGTGAAATTGGCGCAGAATGGATAttacactaacaaaacaaaaaaaatgccttttcaactgtgtcaacttttttttttttttttgtttgttttctagaaAACATGTGAGCAAGCGATTTACTTGTGAGATTTGCTGGTTTTGAACGAAACTTGTAAGATTTTGTCCCCAAGGCGGTAACCATTGAGGCTGGCGATGGCCATAGCAGCCTCTTCGTAGTTTGTCATGGTCACAAAACCAAAACCTTTACATTTATTGGTGTTAAAATCGCGGATCACTTTGACGTTGGTGACCGCACCAAAGGGGCCGAACATCTGCCAGAGGATTCCCTCATCCGCGTCTTGCCCAAGGTTGTAGATGAAGATGCACCAGCCAGAAGTGGAGTTCCCAGGGACGTTGACACCAGAGAGGCCGCTCATGTGGTCGACACTCATTGGAG

Function

symbol description
elavl1 Enables RNA binding activity; protein homodimerization activity; and protein kinase binding activity. Involved in 3'-UTR-mediated mRNA stabilization; negative regulation of gene silencing by miRNA; and protein homooligomerization. Acts upstream of or within mRNA stabilization and positive regulation of translation. Located in cytosol and nucleoplasm.

NR:

description
ELAV-like protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197558 True 3631 lncRNA 0.36 2 19238192 19241844

Neighbor

gene id symbol gene type direction distance location
AMCG00006183 NA coding upstream 9626 19205774 ~ 19228566 (+)
AMCG00006167 NA coding upstream 225861 19010848 ~ 19012331 (+)
AMCG00006168 NA coding upstream 236636 19000774 ~ 19001556 (+)
AMCG00006170 NA coding upstream 497102 18719673 ~ 18741090 (+)
AMCG00006175 fcho1,LOC107751067,LOC101065258,LOC102200842,LOC103367496 coding upstream 602163 18592627 ~ 18636029 (+)
AMCG00006186 NA coding downstream 47555 19289399 ~ 19346208 (+)
AMCG00006185 sin3b,LOC106933771 coding downstream 108071 19349915 ~ 19380787 (+)
AMCG00006200 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 coding downstream 207364 19449208 ~ 19451058 (+)
AMCG00006178 uhrf1,LOC106613510 coding downstream 231453 19473297 ~ 19492763 (+)
AMCG00006181 kdm4b,LOC101065945,LOC106519213,LOC108234360,LOC106937923 coding downstream 281895 19523739 ~ 19539686 (+)
G156869 NA non-coding upstream 17914 19219804 ~ 19220278 (+)
G156842 NA non-coding upstream 291116 18945823 ~ 18947076 (+)
G156809 NA non-coding upstream 388577 18849346 ~ 18849615 (+)
G156807 NA non-coding upstream 394326 18840803 ~ 18843866 (+)
G156777 NA non-coding upstream 460638 18777192 ~ 18777554 (+)
G156928 NA non-coding downstream 148119 19389963 ~ 19390220 (+)
G156930 NA non-coding downstream 152972 19394816 ~ 19395028 (+)
G156933 NA non-coding downstream 159170 19401014 ~ 19401404 (+)
G157009 NA non-coding downstream 981490 20223334 ~ 20223613 (+)
G157010 NA non-coding downstream 986742 20228586 ~ 20229103 (+)
AMCG00006174 NA other upstream 758105 18478128 ~ 18480087 (+)
AMCG00006138 NA other upstream 881603 18190224 ~ 18356589 (+)
G156640 NA other upstream 1257555 17973741 ~ 17980637 (+)
AMCG00006190 LOC107695212,LOC107676806 other upstream 1473964 17746133 ~ 17764228 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other upstream 1503108 17662190 ~ 17735084 (+)

Expression


Co-expression Network