G156947 (uhrf1,LOC107561590,LOC107742786,LOC107549364)


Basic Information

Item Value
gene id G156947
gene name uhrf1,LOC107561590,LOC107742786,LOC107549364
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19485550 ~ 19489841 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU197659
GGCCCTTCTTTAAGAGACTGCATGGCCTCATCCCAGAGCTTCTTATTCTGCTCGTCCTCCTTAATCAGGCCTTTTTGCTCCTTTGTTAGTTTATAAGCCTCCACCTTTACTTTTTTGGGGGTTCGCTTGTTTGGCGAGGACTTTTCATCTCCACCTTGTgattttctcttcctctttccttTGGTAGGAGTATCAGTCACTGCCTCCTCTTCGTTCttattctccttttctttctctttagcAGCAACAGCTTCTAAATATCCCTCAGGATACTGCATAGTGAGTCCAAGCTTCTTAATCCTGTCCTTGCCATCTCTGGTCCACGGGGCTGACTCATCATCATTTCGTCTTAACAAGTACCTCCACACCAGAAAACCAGACTTCCCCTTTTCTGGCCAGTATTTTACAACCTGTAGATGCCATCGTATCGGTTTCCATCCTCTGGGCAGTACTTGCTATGTTTTCGTCCCTTTGAGCTGCGGACAACTCTCACTGGCTTCCCTGCTTTCCAGTCCTTGGCTTCTGCTCCGTCCTTTTCATTTACAACAGCATTGCAATTCAGTGCCAAAG

Function

symbol description
uhrf1 Predicted to enable several functions, including hemi-methylated DNA-binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Acts upstream of or within several processes, including animal organ development; hypermethylation of CpG island; and intestinal epithelial structure maintenance. Located in cytoplasm and nucleus. Is expressed in several structures, including brain; eye; liver; pleuroperitoneal region; and presumptive neural retina. Orthologous to human UHRF1 (ubiquitin like with PHD and ring finger domains 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase UHRF1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197659 True 570 lncRNA 0.46 4 19485550 19489841

Neighbor

gene id symbol gene type direction distance location
AMCG00006199 NA coding downstream 179410 19302660 ~ 19306140 (-)
AMCG00006184 LOC108437281,LOC105889513 coding downstream 216489 19239365 ~ 19269061 (-)
AMCG00006166 gipc3,LOC106574151 coding downstream 368963 19081039 ~ 19116587 (-)
AMCG00006161 myo1f,LOC108413823,LOC108264988,LOC105011638 coding downstream 598407 18853693 ~ 18887143 (-)
AMCG00006172 NA coding downstream 633471 18833330 ~ 18852079 (-)
AMCG00006195 LOC102214220 coding upstream 334984 19824825 ~ 19859369 (-)
AMCG00006196 ptprd,LOC107559826,LOC107717167,LOC107744639 coding upstream 382051 19871892 ~ 19874931 (-)
AMCG00006197 NA coding upstream 390209 19880050 ~ 19881917 (-)
AMCG00006194 LOC106613507,LOC106574153 coding upstream 405584 19895425 ~ 19922471 (-)
AMCG00006193 LOC107744650,LOC103355422 coding upstream 494838 19984679 ~ 19988411 (-)
G156946 LOC107742786 non-coding downstream 5113 19479468 ~ 19480437 (-)
G156935 NA non-coding downstream 72210 19402182 ~ 19413340 (-)
G156932 NA non-coding downstream 85913 19399434 ~ 19399637 (-)
G156929 NA non-coding downstream 95151 19390077 ~ 19390399 (-)
G156862 NA non-coding downstream 453216 19032130 ~ 19032334 (-)
G156971 NA non-coding upstream 227332 19717173 ~ 19717679 (-)
G156979 NA non-coding upstream 315107 19804948 ~ 19805171 (-)
G157011 NA non-coding upstream 738745 20228586 ~ 20229103 (-)
G157020 NA non-coding upstream 864622 20354463 ~ 20354668 (-)
G157030 NA non-coding upstream 876748 20366589 ~ 20366830 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other downstream 22345 19448931 ~ 19463205 (-)
G156907 NA other downstream 191730 19275200 ~ 19293820 (-)
AMCG00006127 NA other downstream 2521900 16947997 ~ 16963650 (-)
G156341 NA other downstream 2804778 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 2963861 16505364 ~ 16521689 (-)
G157059 NA other upstream 1219958 20709799 ~ 20712216 (-)

Expression


Co-expression Network