AMCG00006205


Basic Information

Item Value
gene id AMCG00006205
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 175725 ~ 181496 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006205
ATGAGAGGCGGGCTTACTGCGCGCTGGCCAATGGGAGGGCGGAGCGCTGCGAGGCGGCGCAGAGTTCAGAGGTCCGCCTGGCTGTTCGAGGAGAGAGCGGAGCGGTTAAGTTGCGAGACACGGGTCCCTCCACCGGCCACAGACAGCGGAACCGGGCGGACCCGGAGGACCAGGTGCCCTGTGCTGGAGTGCTGGTTCGTGCAGGAGAAGGCGGGGGCCCGCGGGGGCGGGTTCCCGGCGGCGATGACTCAGGAGAAGAGCCTGATGATCAAGCCGCAGTGTGAGATTAACCCCTTCCTGCCCCAGCCTGCCCTCGTCCAATGGGCCGCCCCACTCACCAGCGTCGCTctaagccccgcccacctgcagGCCGATTGGCTGTCGGCCTCCTTGCAGGGGCTGGACGGGCGGCTGCACCGCGGGGAGGGCCGGCTCCTGCTGGCCTACGACGGGAAGGGCGACCGGTTGGACGAGAGCCGGGAGGAGCGGGCAGGGCTGGATGTAGAGGCCGTGCACCGCACAGGAAACGCATCACTGAGCCTGGAGCGGGCGGAAGTGAGGCATGCTGGGACATACATCTGCACCGTGTACCTGCCCTACATCCTGGCTCAGGTAGCCATGGAGCTGGAGATCATAGAGCCCCCCACGCTCACCCTGTCCCCCTCTCCGGTGTGGGCCGTGTCGGGGCAGTCGGTGTCGGTGCAATGTGAGGCGAGTGGCTTCTACCCGCTGGCCCTGGAGCTAGACTGGGAGTACCAGTCGGTGGGGGGCTCCTCCTCGCTGCCCCTGCCCGGGGGGGACGCGGCGCGGCTGTCAGGACACCGGCAGGGGGGAGCCGGCACGTTCTCGCAGAGCAGCCGGCTGGAGCTGGGGGCGGCGGATCTGGGGGCGCTGGGGCCGGGGGGGCAGCTGCTTGGCCCCAGCATAGAGGACTCAATGGCGATGGTTGCTGTGGCGCTGGTGCTGTATGGTCTGGTGAAGCTGGTGTACTGGAGCCTGGGAGCCACAGGCACCTCTGTTCTGGTCCAGTAG
>TU135311
acacactgacacacactgacacactgatgcacactgacacacacagacacacacagacacactgacacacactgacgctgtgttgtgtgtattgtattaaccctctctccctctcagtgtgGGGGGCTCAGTGCCCTGTGCTGGAGTGCTGGTTCGTGCAGGAGAAGGCGGGGGCCCGCGGGGGCGGGTTCCCGGCGGCGATGACTCAGGAGAAGAGCCTGATGATCGTGAGCCGAGAGTCGGAGCAGCCAGCGCCCAACCACAGCGACGGTGTCCAGCCCAACCGAGTGTACCAGGTCACCGatGCGGGGGGCTCTCTGTGCAGGTCCTCTCTGCGCTCAGTCGAGGGCGCTGTGGAGAAGCCGCAGTGTGAGATTAACCCCTTCCTGCCCCAGCCTGCCCTCGTCCAATGGGCCGCCCCACTCACCAGCGTCGCTctaagccccgcccacctgcagGCCGATTGGCTGTCGGCCTCCTTGCAGGGGCTGGACGGGCGGCTGGTGCTGTCCAATGTGATGCGCGTTCCCACAGGAACCAACCAGGCCACAGtgtgttcagtcGCACTCCAGTGCTGCGCTCCCGGCTGGACGCCCCGGTGCTGCTAGACTGTGGGTTCTGGGCGTGGCCGGGCTGGCCGCTGGCCGGGTCGGGCTTCGCGGTGGAGTGGCGGTACCAGCACCGCGGGGAGGGCCGGCTCCTGCTGGCCTACGACGGGAAGGGCGACCGGTTGGACGAGAGCCGGGAGGAGCGGGCAGGGCTGGATGTAGAGGCCGTGCACCGCACAGGAAACGCATCACTGAGCCTGGAGCGGGCGGAAGTGAGGCATGCTGGGACATACATCTGCACCGTGTACCTGCCCTACATCCTGGCTCAGGTAGCCATGGAGCTGGAGATCATAGAGCCCCCCACGCTCACCCTGTCCCCCTCTCCGGTGTGGGCCGTGTCGGGGCAGTCGGTGTCGGTGCAATGTGAGGCGAGTGGCTTCTACCCGCTGGCCCTGGAGCTAGACTGGGAGTACCAGTCGGTGGGGGGCTCCTCCTCGCTGCCCCTGCCCGGGGGGGACGCGGCGCGGCTGTCAGGA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006205 False 1032 mRNA 0.69 7 175725 181496
TU135311 True 1084 TUCP 0.66 4 177138 179402

Neighbor

gene id symbol gene type direction distance location
AMCG00006206 NA coding upstream 13285 156082 ~ 162440 (+)
AMCG00006207 NA coding upstream 22001 153452 ~ 153724 (+)
AMCG00006204 NA coding upstream 42108 122870 ~ 133617 (+)
AMCG00006202 LOC103152445,LOC106965134,LOC106908295,LOC106581944 coding upstream 122333 38723 ~ 53392 (+)
AMCG00006216 NA coding downstream 23641 205137 ~ 213351 (+)
AMCG00006217 NA coding downstream 60491 241987 ~ 256465 (+)
AMCG00006215 NA coding downstream 85138 266634 ~ 271647 (+)
AMCG00006223 psb8,LOC107694197,LOC107574275,LOC105888923,LOC105903056 coding downstream 92696 274192 ~ 278089 (+)
AMCG00006226 NA coding downstream 102168 283664 ~ 296397 (+)
G108193 NA non-coding upstream 523 132006 ~ 175202 (+)
G108219 NA non-coding upstream 9569 163478 ~ 166156 (+)
G108182 NA non-coding upstream 131812 17651 ~ 43913 (+)
G108239 NA non-coding downstream 81933 263429 ~ 264556 (+)
G108248 NA non-coding downstream 130058 311554 ~ 313413 (+)
G108253 NA non-coding downstream 192640 374136 ~ 392793 (+)
G108256 NA non-coding downstream 202901 384397 ~ 405340 (+)
G108252 NA non-coding downstream 215667 397163 ~ 405264 (+)
AMCG00006208 NA other upstream 35067 133988 ~ 140658 (+)
AMCG00006218 NA other downstream 37608 219104 ~ 225353 (+)
AMCG00006231 NA other downstream 245480 426976 ~ 433905 (+)
AMCG00006236 NA other downstream 463222 644718 ~ 652140 (+)
G108319 NA other downstream 593313 774809 ~ 791062 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other downstream 665065 846561 ~ 855720 (+)

Expression


Co-expression Network