AMCG00006208


Basic Information

Item Value
gene id AMCG00006208
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 133988 ~ 140658 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006208
GTCGGCCGATGTCTGCGCCGAGTAAGCCGTCTGGCGGCCGCGCCTTTAAGCAGCCGCTCCGCAGAGCAGGCGGCCCGGGGCTCCACTCGCCTGGCGCCGCACAGCCTGCACTCCGCTCGGGCTGCCCGGGACACGCAGCCTTCCCTCGGGTGGGTGCCGCACGACCCCCGGATTCCCCCAGGCGGGCTCTGTCCGATACCATACCGGTGCCATGTCCGGCTGCAGCGCTGAGGGGGGCGTGTGGGAGGTGCAGGTGAGCTTCCCCTCGGTGCGGGGGGCGGTTCTGGCCGGTCTGAACCGGCAGCGTCTGGAGGGGCAGTTGTGTGACCTGGCCATCGAGGTGCAGGGCCAGGTGTTCCACGCACACCGCTGCGTGCTGGCAGCCTCCTCGCCATACTTCCACGACCAGGTGCTGCTGAAGAAGGTGTCCAGCGTGTGTCTGCCCTCAGTGCTGGACCCGGGGGCCGTGGAGAGCGTGCTGTCCAGCGTCTACACCGGCCGGCTGGCCATGCTGGGGGCGGACGTGCTGAGCTACCTGACGGTGGCCAGCGTGCTGCAGCTGTGGCACATCGTGGACAAcagcaactACTTCAGCCCCCGGGAGGTGGGCTCCAGCGGAGCGGGGGGGGCGCTGGGCGGCGTGGGGGGCGGGGCCTTCCTGAtcgaggaggacgaggaggaggaagagcggCATCAGGAAGAGGAGGtgatggaggaggagagggacagGCAGGCGGAGCGGCTGCTCTGCGCCCGCCGGAGGGAACCGGGCGGTGCCGTGGTGGAGCCGGCAGATAGCGTGGGGGGGCCCTCGTGCCAGGACGGGGACGCCGCCCCGCCCCGCTCCTCCACCCCGCCCCCCCCGCTCCCACTCCAGAGGAGGCCGGCGCCCAGCCGCCCCCGCCTGCTGCCGCACAGACACTGGGTGGTGGTGAAGACCGAGCGGCCAGCCGAGGAAGAGGTCATCGAAGGGGCGCGGGCCACTGGGGGGGCCGGGCCggaggacgaggaggacgaggaggaggaagaggagagggagagagagagggagctcaGTCACCACAGCGGCCTGGCCCCCGGGACCCCGGCCGCCCCGCCCCCGGCACCCGCCGCCCACGCACAGCTGCTCCCCCTCGACATGCAGGGCAACCAGATCCTGCTGTACAGCCAGGCCCCCCCCCCGGCAGGCCCCGCCTCGCCCCCGGGAACGCTGGCACTGAAGGGGGTTGGGCCCGTGGGGGCGGGGCTGGTGTTCAGCATGGAGTGTGCCGAGGGCGGCGGCGGTGGGATCCCCCTGCTCTCGGGGGGCGGGGGCCGGGCAGCGGTGGGGGACGTGCTCCTGGTGTCGCCGCAGCACGGTGTGGGGGGGTTCGGTGGTGCCAGGGGGGGCGTCTGTGGCGAGGATGACGTGTGCAAGGTGGGAGTGCGGGAGAGTGACGTcacttag
>TU135297
GCTCCACTCGCCTGGCGCCGCACAGCCTGCACTCCGCTCGGGCTGCCCGGGACACGCAGCCTTCCCTCGGGTGGGTGCCGCACGACCCCCGGATTCCCCCAGGCGGGCTCTGTCCGATACCATACCGGTGCCATGTCCGGCTGCAGCGCTGAGGGGGGCGTGTGGGAGGTGCAGGTGAGCTTCCCCTCGGTGCGGGGGGCGGTTCTGGCCGGTCTGAACCGGCAGCGTCTGGAGGGGCAGTTGTGTGACCTGGCCATCGAGGTGCAGGGCCAGGTGTTCCACGCACACCGCTGCGTGCTGGCAGCCTCCTCGCCATACTTCCACGACCAGGTGCTGCTGAAGAAGGTGTCCAGCGTGTGTCTGCCCTCAGTGCTGGACCCGGGGGCCGTGGAGAGCGTGCTGTCCAGCGTCTACACCGGCCGGCTGGCCATGCTGGGGGCGGACGTGCTGAGCTACCTGACGGTGGCCAGCGTGCTGCAGCTGTGGCACATCGTGGACAAGTGCACTGAGCTGCTGCGGGNNN

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10502 ZBTB22, BING1; zinc finger and BTB domain-containing protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006208 True 1447 mRNA 0.73 6 133988 140658
TU135297 False 523 TUCP 0.69 3 134067 138021

Neighbor

gene id symbol gene type direction distance location
AMCG00006204 NA coding upstream 371 122870 ~ 133617 (+)
AMCG00006202 LOC103152445,LOC106965134,LOC106908295,LOC106581944 coding upstream 80596 38723 ~ 53392 (+)
AMCG00006207 NA coding downstream 12794 153452 ~ 153724 (+)
AMCG00006206 NA coding downstream 15424 156082 ~ 162440 (+)
AMCG00006216 NA coding downstream 64479 205137 ~ 213351 (+)
AMCG00006217 NA coding downstream 101329 241987 ~ 256465 (+)
AMCG00006215 NA coding downstream 125976 266634 ~ 271647 (+)
G108182 NA non-coding upstream 90075 17651 ~ 43913 (+)
G108219 NA non-coding downstream 22820 163478 ~ 166156 (+)
G108239 NA non-coding downstream 122771 263429 ~ 264556 (+)
G108248 NA non-coding downstream 170896 311554 ~ 313413 (+)
G108253 NA non-coding downstream 233478 374136 ~ 392793 (+)
G108256 NA non-coding downstream 243739 384397 ~ 405340 (+)
AMCG00006205 NA other downstream 35067 175725 ~ 181496 (+)
AMCG00006218 NA other downstream 78446 219104 ~ 225353 (+)
AMCG00006231 NA other downstream 286318 426976 ~ 433905 (+)
AMCG00006236 NA other downstream 504060 644718 ~ 652140 (+)
G108319 NA other downstream 634151 774809 ~ 791062 (+)

Expression


Co-expression Network