AMCG00006211 (LOC102301914)


Basic Information

Item Value
gene id AMCG00006211
gene name LOC102301914
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 70319 ~ 89489 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006211
AGTTTTCTCAGCAGGAGGCTGAAGGGCTCTATTAAGAGGGCCAAGTCTCAGCCCAAGCTGGACCGAACCAGCAGCTTCCGCCACATGATCCTGCCCCGCTTCCGCAGTGCCGACCAGGaccgCACGGCGGCTGAGGCACTGGACCTCACGCTGGATGAGGACGCGCTCATCAAGCCTGTCCACTCCAGCATCCTGGGCCAGGAGTACTGCTTTGAGGTGACCACGGCGTCAGGGACGAAGTGCTTTGCGTGTCGCTCGGCGGCGGAGAGAGACAAGTGGATTGAAAACCTGCAGAGAGCAGTGAAACCCAacaaggATAACAGCCGGCGGGTGGACAATGTCTTGAAGCTGTGGATCATTGAGGCCAGAGACCTGCCGCCCAAGAAGCGCTACTACTGCGAGCTGTGCCTGGACGACATGCTGTACGCACGCACCACCAGCAAGCCGCGAACCGACACCGTGTTCTGGGGAGAGCACTTCGAGTTCAACAACCTGCCGGCTGTGCGCAACCTGCGGCTGCACCTGTACAAGGAGACGGACAAGAAGAGGCGCAAGgaGAAGAGCACGTACCTGGGGCTGGTCAGTATCCCTATCTCCAGTGTGACGGGGCGCCAGTTTGTGGAGCAGTGGTACCCGGTCATACAGCCCAGTGTGCTGGCCAAGGGCGgcggtgtgggggggggcaagGCTGTCAACGCCTCCCTGCGGCTCAAGTCGCGCTATCAGACTATGAGCATCCTGCCCATGGAGCTGTACAAGGAGTTTGCAGAGTTTGTCACCAACAACTACCGCGCGCTGTGCGGCGTGCTGGAGCCGGTGCTCAGTGTGCGCAGCAAGGAGGAGGTGGCCTGTGCGCTGGTTCACATCCTGCAGAGCACCGGCAAGGCCAAGGACTTCCTGTCAGACATGGCGATGTGTGAGGTTGACCGCTTTATCGACAGAGAGCACCTGATCTTCAGGGAGAACACACTGGCCAGCAAGGCCGTGGAGGAATACCTCAAGCTCATTGGACACAAGTACCTCAAGGATGCCATTGGAGAGTTTATCCGCGCTCTGTATGAGTCAGAAGAGAACTGTGAAGTTGACCCCATGAAGACTCCGCCCTCTGTGCTGGCTGACCACCAGGCCAACCTGCGCATGTGCTGCGAGCTGGCACTCTGCAAGATCGTGAACTCCCATTGCGTGTTCCCGCGGGAGCTTAAGGAGCTGTTTGCATCCTGGCGGGTGCGCTGTGCGGAGCGTGGCCGGGAGGACATTGCTGACCGCCTCATCTCTGCCTCGCTGTTCCTACGCTTCCTATGCCCAGCTGTGATGTCACCCAGCCTGTTCAGCCTGACGCAGGAGTACCCTGACGAGCAGACCTCCCGCACCCTCACCCTCATCGCAAAGGTCATCCAGAACCTCGCCAACTTCTCCAAGTTCGGCAGTAAGGAGGAGTATATGTGCTTCATGAATGAGTTCCTGGAGATGGAGTGGGGGTCCATGCAGCAGTTCCTCTACGAGATCTCCAACCTGGACAGCGTGACGAGCGCTGGGGGCTTCGAGGGCTACATCGACCTGGGCCGGGAGCTGtccacactgcactgcctgcTGTGGGAGGTCATGGGCCAGCTCAGCaagGATGTGTTCTATGTGACACGTCCCCCGCTGGCCCGCTCCAGCCCCGCCTACTGCACCAGCAGCTCTGACATCACCGAGCCAGACCCCAAGGTGCTGAGTGTCAATAAGAGTGTGTCAATGATGGACCTGCAGGACTCGCGCATGAACAGCATCTCGAACCTGCAGTCGCTGGGCGGGACGACGGACTCGCTgtcgcagcagcagcaggcggCTGCCCTGCGCTTCCCGCTGTCCTTCCAGAACCCGCTGTTCCACCTGGCCGCCGATGGCCCCCAGCCGCCCCCCCCCCGCGGGATGCACCCCCAGCTCTCCCAGCACCAGCCCCCGCCGCCGCTCCTGCTGGCCCCCGAGCCCCACTCCGAGCCAACCCACCCCGCCTTCCTGCCCGCCTTTGGCCACGGCGGCTTCTCCCGCAGCGAGGACCTGTCCTCCCTCAGGCCTGGGGGGCCAGGGGGACCGGGAGGGCTGGGCCAGCCGCCGATTATCCACTCCCACAGCTACAGCGACGACTACACCCGGCAGAACCAGGCTGACTCAATCGCCCCACCCCCACCGCAGCGCGTCAAATCACAGGCCTCACACCAGCTGTCTGTTAGCGCGGCCGCCACCCAGGCCCCGCCCCCAGCCCCGCCCAAAGTCCGCCCCCCAAGTGGCAACCTCCTCCAATCGCCGGAGTCGAGCTTTGGGGGCAGGCCCTCGCCTCGGCAACAGCTGTCCGTCAAAGACAGCCCCGCCCCAGGTCTGCCCCACCAGCAGAGCTCCGTGCGCGAGCCTGGGGTCACGGCAGGGtcgcagggtggggggggtggctcTGGGGCTGCTGGAGGGCCAGGTGGGGGGGCGACTCAGAgcacacaaccacaacaacaacagcaacagcaacagcagcaacaatcACAGCAACAATCACAGCAACACCTACTGAAACCAGCAATCAGCAAACAGGGCTCTCAGTCCCCTTCCACGctgaacccccccacccctgcctcCGAGCGCACGGTCGCCTGGGTGAGCAACATGCCGCACCTGTCGGCCGACATCGAGAGCTCGCACATCGACAGAGAGGACTTCAAACTGAAGGAGTACAGCAAGAGCATGGACGAGTCTCGGCTGGACAGgGAGCAGCAGACCAGCAAGATCCTGCTGCAGTACCAGAGCCGCCTGGAGGAGAGCGAGCGCCGGCTGCGGCTGCAGCAGGTGGAGAAGGACTCCCAGATCAAGGGCATCATCAACAGGTACTGA

Function

NR:

description
PREDICTED: ras/Rap GTPase-activating protein SynGAP-like isoform X3

GO: NA

KEGG:

id description
K17631 SYNGAP, RASA5; Ras/Rap GTPase-activating protein SynGAP

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006211 True 2862 mRNA 0.63 15 70319 89489

Neighbor

gene id symbol gene type direction distance location
AMCG00006203 NA coding downstream 26192 10483 ~ 44127 (-)
AMCG00006212 NA coding upstream 10413 99902 ~ 108542 (-)
AMCG00006209 NA coding upstream 52583 142072 ~ 146398 (-)
AMCG00006210 NA coding upstream 57882 147371 ~ 150061 (-)
AMCG00006213 NA coding upstream 74113 163602 ~ 165518 (-)
AMCG00006214 NA coding upstream 76431 165920 ~ 172382 (-)
G108329 NA non-coding downstream 30970 33213 ~ 39349 (-)
G108323 NA non-coding downstream 48969 17554 ~ 21350 (-)
G108349 NA non-coding upstream 27648 117137 ~ 118399 (-)
G108330 NA non-coding upstream 51070 140559 ~ 175193 (-)
G108365 NA non-coding upstream 181267 270756 ~ 278261 (-)
G108366 NA non-coding upstream 275789 365278 ~ 368624 (-)
G108397 NA non-coding upstream 345912 435401 ~ 435621 (-)
G108379 NA other upstream 244299 333788 ~ 343011 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other upstream 304343 393832 ~ 397899 (-)
AMCG00006241 NA other upstream 390093 479582 ~ 562415 (-)
AMCG00006243 NA other upstream 611046 700535 ~ 701940 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other upstream 636575 726064 ~ 748736 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013710 syngap1a coding NC_007130.7 CM002903.2 232536 ~ 276802 (+)
grasscarp (Ctenopharyngodon idella) CI01000117_00263368_00291106 SYNGAP1A coding CI01000117 null 262281 ~ 292745 (-)