AMCG00006218


Basic Information

Item Value
gene id AMCG00006218
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 219104 ~ 225353 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006218
ATGCAACCTTTGAAGCGAATATCCGCGGGCGATGAGAGACACCAGTGCAGGACGCTGAGGCTTCCACGACAAACTGGAGCCTCGATGTGTCCGGGGTCAGTCGCCCCCCAGGTGTCTCTGTTCCAGAGGGACCCCAGTTCCCCTGTGTCCTGCCTGGCCACGGGCTTCTTCCCCAAAGACATATTGGTGTCCTGGAAGAGAGACGGACAGGAGCTGCACGAGGGGGTGGAGAGCGGGGAGCTGCTGTCCAATGGGGACGGGACGTTCCAGCCAGTGACAGCGGGTCTGACAGGTCTTCAGACAACGGGGCTGCCAAAGCCTGAGGCTCCTGCGGGAGAGTGTGATCTAATCAGAGTAGAGGATAAAGAGACCAGCTGA
>TU135327
GAAGAAGTACGTCGGCTACGGCAGGCAGACTCTGGAGAGGAAAGTCGCCCCCCAGGTGTCTCTGTTCCAGAGGGACCCCAGTTCCCCTGTGTCCTGCCTGGCCACGGGCTTCTTCCCCAAAGACATATTGGTGTCCTGGAAGAGAGACGGACAGGAGCTGCACGAGGGGGTGGAGAGCGGGGAGCTGCTGTCCAATGGGGACGGGACGTTCCAGGTCAGGAAGAGCGTGAGGGTCTCGCCTGAGGGGAGCTACACCTGCCATGTGGACCATGTGGGAGGGAAGATCCTCATCAAGACATGGGtgcCCCCCTCTAACCTGGCGGTGATCGTCGGTGTGATCATAGCTGCAGTCCTGGTCCTGATCGCTGCCATTGTCGGGGTTGTCATCTGGAAGAAGAGATCAGCTACGAAGTACAACCCTGCTCAGACCAGTGACAGCGGGTCTGACAGGTCTTCAGACAACGGGGCTGCCAAAGCCTGAGGCTCCTGCGGGAGAGTGTGATCTAATCAGAGTAGAGGATAAAGAGACCAGCTGATCCTGCTTCAATAAGACCAACAATCACACTCTCACATAttctataacacacacacacacacacacacacacacactattcaCACTCTCCCTGTCAGACACAAAACCTCaatctcatacacacacacacactcaataaTTACAGCCTATAGAGACCATAGACACTGGAGCTGCTCTCAGACACTCACTCCCACACACAGTGACTCCCACggacactcactcactcccacacacacactgactctctctctctcacacacatacacacacacccactgcTTTTACACAGTGGCTGAAATATCCGCGCACTTCAGATTTGAATAAGGacacatgttttaaaatgtcacaaaccTTGTGTATTAACAGCAGTCTCGTTTTAAACCTTTATCCCAAACCCCAAGTCTGAGCTTGGACTGACACCGTTTATAGAGCAGCTCCACTGTCTGTGGTGatgattattcattttatttttgcactgtctctgtgtttctctctgctctgtgtatATAGTGCTGATTTAGCTTTGTCTTGTGCTCCCTGTGTGTCCGTTGCACAGAGCCCCCTGTCCACAGCCCACTGAACCCACTGAACCCCAACAGCCCACAGAGCCCACAGCATCCACAGCTGATGGAAAGGGGGCCAGTTCAAAACTTTGACAAACTCCCACTTCGTTTTACAGAATTACCCAAAGAAAGTGAAAAGCCTCGTCAGTGGCTAGTTTCCTCGGAGAGCTCTGCAGAGCTGCCTGAAAGGGCATGCAAAGGGCAGGTCACACCGAGCCAACATGCAGAGCTGGCGTGAATTAGACGAAAGGCTGAAACCTGGCAAAACCATAGACAGTGCCAGTCAGGAATGACAGGCTGTGACAGTGAGCCCTGCAGGGCTGCGTTGAGCAGAATAATTGCCAGTGTTTGTCATTGAGCAGAACGTAATGTTAAAAGGACATTCAGAGACTTGTTGAGCCCCATTATGGCCGCTTCCATGGACAGATAGAGCTTTGGCTCAGCTTGACTCCATAATGAGCAACATCTGACAGGGACTGGTGAGAGGTCACTGCTGTGTGGTAACAATACGATTGGCATGACAGGTGGAGGGGCCCCTAAACTGATCTTTGATTGGGGCCACAAAATTGACAAACCTGTCCCTGGCTTCAGGGCGTGGCCAGGCAGCGGGGTCCAGACCCCCCAGGACTGCTGAGTACAAGGCTGCCCCTCTGCAGCGCCCATCCCAGTCCTGAGCACAGGGCCACTGTGTCCCAGTAACCTGGGTAAGAGCGGCTGCCAGGCTCATACAGGCTCTCCGCTCTGAGTGAGTCAGTCAGACTGGGCAGTGTCTTCAGGCCGAGCACAGTCCTGCCTGGGACACCGTGGGACAGtgacacacacggacacagacacctctgaatatatatatatatatatatacagatgattgattgattgattgattgagatTTACTTTCATTATTGTAAGAGCGGTGgaggtttaattttattttaatgttttattgtttgtgtgtttttaatactgGGGGGTAGGGGGGTAGGGATTTATAATTATCTTTAATCTCAGCGTCTTGTTAAGAATTAAGCTCCTcaaaccattttatttcattccatcttaataaatacagtaaccGCCTGTCTGTCCACATGTCAGTCATCACAGCCGAGGGGTTGGTCATTCTGTGGTGACCGGGGTCGGTGGTCTCAGGCAGGGGCTCCCCGGGGCCAGGATTGGGGACCAGTGACCAGGAAACACGAGCAGCAGGCTGGTCTGATCGATAAAAACATATCGCATTGTTTCTAAATTCAGGGTCAGAGTCTCTCAGCAGTTTAACCAGAGAAAATCACTGATCTGTCTCAATTCTGTGTAAAATAACACAACCCCTTTTTTAGTTTTGCTGTTTAAATAGAACCAGGACTCTGATGGGGGGGATCTTatgtttgaaaaaatgtatttgtttggctttcaaaaaaataaagtatatttggGTGAATCCTAgtctctgtgttttttcctgtgATCCAGTCTGAGCAGCAGCTACTGGGATCAACACAGCGACAGCAGATGTGTGTCCACTGTAGGGCCTGTCCTCGACAGAAGGGAGTGTGAACAGTGCTACAGTCTGCCTCAGCATGGTGTCTATAGCTGTGCATCTGGAGAGATGTATGTTATGCGCtgtaaaagtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcact

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006218 False 378 mRNA 0.60 4 219104 223117
TU135327 True 2772 lncRNA 0.49 6 221271 225353

Neighbor

gene id symbol gene type direction distance location
AMCG00006216 NA coding upstream 5753 205137 ~ 213351 (+)
AMCG00006206 NA coding upstream 56664 156082 ~ 162440 (+)
AMCG00006207 NA coding upstream 65380 153452 ~ 153724 (+)
AMCG00006204 NA coding upstream 85487 122870 ~ 133617 (+)
AMCG00006202 LOC103152445,LOC106965134,LOC106908295,LOC106581944 coding upstream 165712 38723 ~ 53392 (+)
AMCG00006217 NA coding downstream 16634 241987 ~ 256465 (+)
AMCG00006215 NA coding downstream 41281 266634 ~ 271647 (+)
AMCG00006223 psb8,LOC107694197,LOC107574275,LOC105888923,LOC105903056 coding downstream 48839 274192 ~ 278089 (+)
AMCG00006226 NA coding downstream 58311 283664 ~ 296397 (+)
AMCG00006225 NA coding downstream 73986 299339 ~ 302585 (+)
G108193 NA non-coding upstream 43902 132006 ~ 175202 (+)
G108219 NA non-coding upstream 52948 163478 ~ 166156 (+)
G108182 NA non-coding upstream 175191 17651 ~ 43913 (+)
G108239 NA non-coding downstream 38076 263429 ~ 264556 (+)
G108248 NA non-coding downstream 86201 311554 ~ 313413 (+)
G108253 NA non-coding downstream 148783 374136 ~ 392793 (+)
G108256 NA non-coding downstream 159044 384397 ~ 405340 (+)
G108252 NA non-coding downstream 171810 397163 ~ 405264 (+)
AMCG00006205 NA other upstream 37608 175725 ~ 181496 (+)
AMCG00006208 NA other upstream 78446 133988 ~ 140658 (+)
AMCG00006231 NA other downstream 201623 426976 ~ 433905 (+)
AMCG00006236 NA other downstream 419365 644718 ~ 652140 (+)
G108319 NA other downstream 549456 774809 ~ 791062 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other downstream 621208 846561 ~ 855720 (+)
AMCG00006256 NA other downstream 760520 985873 ~ 1003871 (+)

Expression


Co-expression Network