AMCG00006224


Basic Information

Item Value
gene id AMCG00006224
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 320671 ~ 337280 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006224
ATGAAGCGTCTGTTTACTCCTGGTACCCCCGCTGCAGTCCCGGGACAGCTGCCCTGCGGCTGTGTGTGCATGAACACACGAGCATCGGCTCCAAACCAGTccagcccagcacagcacagcccagtccagcccagtccagcccagcccagcccagcccaacctagtccagtccagtccagccctgGACTGGTCCTGGTGATGAGCCCGGCCCAGCCACTGCTGATGCTGCGCAGTGTCCCCGTGTGGGGGGCGGCGCTGGGCAGTGACCTGGCCGTGTGTGTGGCGCTGCAGGGGGTGGCAGCCGTGCTGCTGCCCCCGCCCCGGAGCCCCTTCGGCTGGCAGAGCCCGGCGCGGCTGTGGCTGCTGGCGCTGGTGCGGCTGGCGGCGCTGCAGTgcgtgtggggggggcggcCGGTGCTGCGCCGCTGCCTGGCCACGCTGGCCCTGCTGGCCCCGCTGTACGAGACCGGCCGGCTGGCGCTGCTGGGGCGGCCGGTGGAGAGCTGGAGCGGCGCACTGCCCGACGCCCGCCTCGCCGCCCTGGCCCTCGCCGCCACCGCCGCCGCCTGCCTGTTCTGGGAGCTCAGCCTCCCCAGCGGCCCGGCGGGGGGCAGCGGGCAGCACCGGGCCAGAGTGCTGTTCATGAGGGTGGTGCGCTACTCCCGACCCGATGCGCTCTACCTGGGGGGCGCCTTCCTCTTCCTCACGGTGGCTGTGATGTgtgaGATGTTCATTCCCTACTACACTGGGCAGGTGATCGATATCTTGGGTTCCCGGTACCAACAGAGCAGCTTCCACTGGGCCATCCTGTGCATGGGGCTGTTCTCTGTGGGCAGctCCCTGGCGGCAGGCCTGCGGGGGGGGCTGTTCATGTACACAGTGTCCCGGCTCAATAAGAGGGTGCGGCTCATGCTGTTCCAGTCTCTGAGGGGCTGCTCACCCACACGCGCTGAGACTCTCTGCTCTGCAGGGGAGCTGACGTCCCGCCTGTCTGCCGACACAATGCTGATGAGCCACTCGATTGCCATGAATGTGAACGTGCTGCTGCGCAGCGTGGTGAAGACGCTGGGGGTGCTGGCGCTGATGCTCAGCCTGTCCTGGAGGATGACACTGGTCACCTTCATCGAGACACCGCTGCTCGCGGTGCTGCAGAAGATATACAACTCCTACTACGAGCGGCTGGCGCGGGAGGTGCAGGACTCGGTGGCAAGGGCGAACGAGGCTGCGGGGGAGGCGGTGTCATCCATCAGAACGCTCATCCAGGCTGGTCACATGACCACAGGACACTTGGTCTCCTTCATCCTGTACCAGAAGGACATGGCCACCCACATCAGGACCCTGGTGTACATCTACTCCAACATGCTGAACTCGGTGGGCGCGGCAGCCAAGGTGTTTGAGTACCTGGACAGGGAGCCACAGGTGCGCTGTGACGGTCGCCTGCAGCCGCCCGCTCTGAGAGGACATGTCCAGTTCAGCAACGTCACCTTCTGCTACCCCAGCCGCCCGGACTGCCCTGCCCTAAAGGGCGTGTCTCTGGAGCTGTGGCCGGGTCAGGTGACAGCCCTGGTCGGCCCCTCAGGAGGGGGTAAGAGcacctgtgtgtctctgctggaGAGATTCTACCAGCCCCAGGAGGGACAAATCCTGCTGGATGGACAGCTGCTGGACAGTTACGAGCACCAGTACCTGCACCACAAGatCTCCATGGTTGGCTTCCTGTTGAACACGTGTTCTCGAGAGCGTCCCAGAGTCACTGCAgagagtccagtccagtgcagtccagCTCAGCCCAGTgtactacagtacagttcactGCAGTGCTTCCCACCCCACTGGAGTCCAGTCCATTTCACTGAtatccagtccagtccagaccaatccagtccagcccagtggagtccagtccagttcacTGATATCCAGTCCAGCCCCGCGGTGATGAGCCCGGCCCAGCCACTGCTGATGCTGCGCAGTGTCCCCGTGTGGGGGGCGGCGCTGGGCAGTGACCTGGCCGTGTGTGTGGCGCTGCAGGGGGTGGCAGCCGTGCTGCTGCCCCCGCCCCGGAGCCCCTTCGGCTGGCAGAGCCCGGCGCGGCTGTGGCTGCTGGCGCTGGCGCGGCTGGCGGCGCTGCAGTgcgtgtggggggggcggcCGGTGCTGCGCCGCTGCCTGGCCACGCTGGCCCTGCTGGCCCCGCTGTACGAGAGCGGCCGGCTGGCGCTGCTGGGGCGGCCGGTGGAGAGCTGGAGCGGCGCACTGCCCGACGCCCGCCTCGCCGCCCTGGCCCTCGCCGCCACCGCCGCCGCCTGCCTGTTCTGGGAGCTCAGCCTCCCCAGCGGCCCGGCGAGGGGTAGCGGGCAGCACCGGGCCAGAGTGCTGTTCATGAGGGTGGTGCGCTTCGCCCTGCACGATGCCTGGCTGCTGCTGGGAgccttcctcttcctcactgTCGCTGTGATGTgtgaGATGTTCATTCCCTACTACACTGGGCAGGTGATCGATATCTTGGGCTCCCAGTATCAACAGAGCAGCTTCCACTGGGCCATCCTGTGCATGGGGCTGTTCTCTGTGGGCAGCTCCATGGCCGCTGGCTGTCGCGGGGGTCTGTTCATGTGCACCATCTCGAGCTTCACTCGCCGCATGAAGCTGCAGCTGTTCAGAGCGCTGCTGGGCCAGGAGATCGGCTTCTTCGAGGCGACCAAGACAGGCGACATCACGTCCCGGCTGGCCACGGACACGGCTCTGATGGGCCGCGCGGTGGCGCTGAACGTCAACGTGCTCCTGCGCACGCTGATCCGCACGGCCGGCATGCTGGCACTCATGCGGCTGGCACGGGAGGTGCAGGACTCGGTGGCGCGGGCGAACGAGGCGGCAGGGGAGGCGGTGTCATCCATCAGGACGAGTGGCCAGATGAGCGCCGGCAACCTGGTGTCCTTCATCCTCTATCAGATGGACCTGGGAGACAACATCCGGACCCTGATTTACATCTTCGGGGACATGCTGAACTCGGTGGGCGCGGCGGCCAAGGTGTTTGAGTACCTGGACAGAGAACCGCAGGTGTGCTGTGACGGCTGCCTGCAGCCGCCCGCTCTGAGAGGACACGTCCAGTTCAGCAACGTCTCCTTCTGCTACCCCAGCCGCCCGGACTGCCCTGCCCTAAAGGGCGTGTCTCTGGAGCTGCGGCCAGGTCAGGTGACAGCCCTGGTGGGCCCCTCAGGAGGGGGGAAGAGCACATatCTCCATGGTTGGTCAGGAGCCGATGTGGGTGAGCGCGGAGGCCAGCTCTCTGGGGGTCAGAAGCAGTGCATCGCCATAGCTAGAGCCCTGATCAGAGACCCACAGATCCTCATCCTGGACGAGGCCACCAGCTGCCTGGACACGGACAGCGAGCAAGTGaTCCAGAAGGCCCTGTCCAGCTGTGTCTCTCAGACGGTGCTGCTCGTGGCTCACAGGCTGAAGACAGTGGAGAAGGCTGATCAGATCATCCTGATTGACAGCGGGGGGGTCCACTGGTCATCGCTCGAGCGCCTCTCCAACAGAACCGGCTTGCTGGTTCATGCCTTGGTGTACAGGGAACACGTCTAA

Function

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0046686 response to cadmium ion biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0002428 antigen processing and presentation of peptide antigen via MHC class Ib biological_process
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I biological_process
GO:0002483 antigen processing and presentation of endogenous peptide antigen biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0031090 organelle membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0046977 TAP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006224 True 3585 mRNA 0.66 22 320671 337280

Neighbor

gene id symbol gene type direction distance location
AMCG00006225 NA coding upstream 18086 299339 ~ 302585 (+)
AMCG00006226 NA coding upstream 24274 283664 ~ 296397 (+)
AMCG00006223 psb8,LOC107694197,LOC107574275,LOC105888923,LOC105903056 coding upstream 42582 274192 ~ 278089 (+)
AMCG00006215 NA coding upstream 49024 266634 ~ 271647 (+)
AMCG00006217 NA coding upstream 64206 241987 ~ 256465 (+)
AMCG00006235 NA coding downstream 153425 490705 ~ 491797 (+)
AMCG00006233 NA coding downstream 210546 547826 ~ 562265 (+)
AMCG00006234 NA coding downstream 232124 569404 ~ 576257 (+)
AMCG00006237 NA coding downstream 273187 610467 ~ 633814 (+)
AMCG00006252 NA coding downstream 551798 889078 ~ 895444 (+)
G108248 NA non-coding upstream 7258 311554 ~ 313413 (+)
G108239 NA non-coding upstream 56115 263429 ~ 264556 (+)
G108193 NA non-coding upstream 145469 132006 ~ 175202 (+)
G108219 NA non-coding upstream 154515 163478 ~ 166156 (+)
G108182 NA non-coding upstream 276758 17651 ~ 43913 (+)
G108253 NA non-coding downstream 36856 374136 ~ 392793 (+)
G108256 NA non-coding downstream 47117 384397 ~ 405340 (+)
G108252 NA non-coding downstream 59883 397163 ~ 405264 (+)
G108263 NA non-coding downstream 98121 435401 ~ 435621 (+)
G108312 NA non-coding downstream 370777 708057 ~ 708928 (+)
AMCG00006218 NA other upstream 95318 219104 ~ 225353 (+)
AMCG00006205 NA other upstream 139175 175725 ~ 181496 (+)
AMCG00006208 NA other upstream 180013 133988 ~ 140658 (+)
AMCG00006231 NA other downstream 89696 426976 ~ 433905 (+)
AMCG00006236 NA other downstream 307438 644718 ~ 652140 (+)
G108319 NA other downstream 437529 774809 ~ 791062 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other downstream 509281 846561 ~ 855720 (+)
AMCG00006256 NA other downstream 648593 985873 ~ 1003871 (+)

Expression


Co-expression Network