AMCG00006227


Basic Information

Item Value
gene id AMCG00006227
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 311224 ~ 321088 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006227
CGGGCTCTGCCAGCCGAAGGGGCTCCGGGGCGGGGGCAGCAGCACGGCTGCCACCCCCTGCAGCGCCACACACACGGCCAGGTCACTGCCCAGCGCCGCCCCCCACACGGGGACACTGCGCAGCATCAGCAGTGGCTGGGCCGGGCTCATCACCAGGACCAGTCcagggctggactggactggactaggttgggctgggctgggctgggctggactgggctggactgggctgtgctgtgctgggctggACTGGTTTGGAGCCGATGCTCTTCAGAAGATGCCTCCGGCAGCGCTTCTCTCTGTGCGTGCGGTGCGGTGCGTCTGTGCGTCTGTGCGTGCTGCGTGTCCCGCAGGGGGCGCTCTGCTCTGCGCTGCGCTGGTCTGCTCTGCGCTGCGGGTCTGCGGGCTCTGCGCTGCGCTGCTCTGCGGGTCTGCGGGCTCTGCGCTGCGCTGCTCTGCGCTGCTCTGCGCTGGTCTGCGCTGCTCTGCGGGTCTGCTCTGCTCTGCGCTGGTCTGCTCTGCGCTGCGGGCtctgcgctgcgctgcgctgctCTGCTCTGCGGGTCTTTTGGCTCTGCGCTGCGCAGGGCTGCTGTTCTCACAGGAGCTTCAGGCGTCAAGCAGCAGTAATGCGCTAATGCTGCGCCTCGTATCTAAAACAAGCGCATATCACACACTCACCCCAGTGCCGCTGCGGATGGTGGGCGCGACGGatccagtgtttttttctggtttctgtCTTCCTGTACATAAACTAGTTTCGGTTTCGTGCCAGGATTTATATAGTGGGCGGAGCACCGAGGCAGAGCACGCACAGCCGCCGGACAGCGGACACGCACAGCCGCCGGACAGCGGACACGCACAGCCGCCTGCGCTCTGCAGTCTCACTCAGATAACCAAGAGTAACCCCGAGCCGGCCGGCAGaccACTGacccatccctctctctgtcactaTGAGGCTCTGGCTCTCTCTGActctgctgctctgtgctgaCCTGGGTGTCGTACAGCTGCTGCGCTGGGCCCACCTCTCCtactcttcctcctctcccaccTCCGCTCCCTCCTCCGCTCCCTCGCTCCAGCACCAGCCCCTCATCACAGTGTGGGGGGGCGGCCTGCTGCGcgccctgctcctcctcctcctgtctgTCCCCCTGTCCCTCCCCGTCTCCCTGGGCCCCCCGCTGGTCGTGCTGTTCCTGCTCTGCCCCTCGTACTGCTCTCTGCGCCGGGCCCTGGCACTGCCCTTGGCAGAGCTGCAGTGGGGTTGGCACTCCTGGCCCTGGGTGTTGCAGGGGTACCTGGTCACGGCGGTGGGGGTGTTACTGTACCGGCGCTATGGCCCCTCCCTCTGCGCTACCGCCCCCACCTCATCCAGCGCTCCGGCAGCGGGCGTGTCTCTGCGGCGGCTCCTGGGGTACATGCGCCCCGACGCCAAGAAGTTCGGGTTCATCGGCGTCTTCCTGGTGGTCTCCTCTCTGGGAGAGATGGCCATCCCCTTCTACACGGGCCGGATGACGGACTGGATCATGAACGAGGACGAGCCCGAGGCCTTCACTCACGCCATCACCGCCATGACCCTCATCACCGTCATGAGTGcggtgtgtgagtttgtgtgtgaccTGATCTACAACGTGACGATGAGTCTGATCCACACGCGCATCCAGGGGCTGGTGTTCAGCTCGGTGCTGAAGCAGGAGATCGCCTTCTTCGACAGCATGCACACCGgtGACATCGTGTCCCGGATcaccacagacacaaacacgATGAGCGAGTCTCTGAGTGAGAAGCTCAGTCTGCTCATGTGGTACCTGATGCGCGtgctcttcctcttctccttcatGCTGCGTCTGTCCGGCCGCCTGGCCCTGTTCACCGCGCTGGGGCTGCCGCTCATCTGGCTCTCCCTGTCGGCGAAGGTGCAGAGCTCCCTGGCCAAGGCCAACGACGTCGCCACAGAGACGTTCTCGCTGATTAAGACGGTGCGCAGCTTTGCGAACGAGGAGGGGGAGGCGCGGCGCTACGCGGAGCGGCTGGAGGAGACGTACACGCACAACAAGACTGAGGCAGCCGCCTACGCCCTATCCACCTGGACCAACAGCctgTCCAGTCTGGCTCTGAAGGTCAGTATCCTGTACTACGGGGGCCGGCTGGTAACTGGAGGCGATGTGTCCAGCGGCGACCTGGTGTCCTTCGTGCTGTATGAGCTGCAGTTCACCTCGGCCGTTGAGgtgCTGTTGAATTATTACCCCCACGTGAAGAAGGCGATCGGGGCGTCAGAGAAGATCTTCGAGTTCATGGACCGGGAACTGCTGTTGCCCCCTGAGGGTCACCTGGCGCCCAAGCACCTGCGGGCCCTGGTGGGCCCCTCAGGGGGGGGGAAGAGCACCTGCGTGTCTCTGCTGGAGAGATTCTACCAGCCACAGCAGGGACAAATCCTGCTGGACGGACAGCCGCTGTACAGCTACGAGCACCAGTACCTGCACCACAAGatCGCAGTGGTCAGTCAGGAGCCGGTGCTGTTCGCTCGCTCGGTGCAGGAGAACATCGCGTACGGTCAGGAGGAGGTGGACAAAGCCGAGGTCACCAGGGCAGCCAAGCTGGCCCACGCACACACCTTCATCGACGGCCTGCAGAGCGGATACGACACAGATGCGGGGGAGAAGGGAGGGCAGCTCTCCGGGGGGCAGAAGCAGCGCATCGCGATCGCCAGGGCGCTGGTCAGACGCCCCAcggtgctggtgctggacgACGCCACCAGCTCCCTGGACACTGAGAGCGAGCACAAGATTCACCAGGCGCTGCTGAACAGCTCTCGCGGCTGTGCGGTGCTGCTGATCGCCCACCGGCTGGCGGCCGTGGAGAGGGCTCACGAGATCGTGGTGCTGGAGGGGGGGCAGGTGGTGGAGAGGGGCTCCCACTGCCAGCTGCTGGAGAGGGGGGGCAGCTACTGGCGCCTGGTGCGGAAACAGAACACGGCCTTCCAGCGCACCGAGGGGACGGAGTGGACGAAGACACAGgaggactgagagagagagagggaggctgtGGACAGACCAGCCCACGGCACCTAGAGCAgcgcagtcagtcagtgtccatgcgtgcctctctctctctctctctccctctctcctatGAGCGGTGCATGTACTGAGTGTAACAGGCTCGTTACACTGACATCACCCCTCTGAgaatcagtacagtgttaaaccTCCTGCGCTGGGAGAGCCCATCTTTTGgcctctctgtttctctctctcagcgtAATGTTGaacccctgctctctctctcactgtttctctctctcagtacagTGTTGaacccctgctctctctctctggatggCCGTCCCTCACACTGTGAGATGTTGCCACTGTGTTGTGTACCTCAGTCCACCTCAGACACGCTGCCCGGACGTACAAATTCCTCCAAGATTAAAAAAGGTTAATCCACCTTTCAAATTTATTCCTGGGTTAAACCTGTGGTCCAATAGGATACTatttctgtcttgttttaagAAATCTTTCATCTTGGGTTCATTTTGAACTATGATTAACTATAAAACCATGTCCACATTTGTGTGCATGCTGATCAGAGTACAATCCTCGATGTAATCAGATCGTGTCATTGCAATCTGCCCTGACTGTCCAGAGCCAGGGATGGCCAGCCCTGATTGACAGCCGATTACCTTCTGCTGTGTTCGGACACTGGAGCGTCTGATCCTGGCCTGGGGAGAGAACATATTATTGACCActctggtatttatttttaaagacaagaAAGCTCTGATTCCTCTCTACTGTGCATATGTAtctttgctgttgctgttgctgctgttgtacctGAGTTCAGGCAGGCCTTCCACAACCCATAATTTATGACTTCAGTAAAACCCAGACTGGACCCCAGTGCCACTCGCTCGCTCGCTCAGAGACCTGCAGCCCAGCCTGCCcctcacagtgcagtgtgtggacagACAGTGAGGGACGGAGAAAGGgacagtgagagaggagagagcgaCGACTGCACTGGGGCCGTGGCAGAGGGGCTGAATTTCCATTTTTCTCGCAGTCTGTACAGAAACCCTTGACAGCAGGACAACAAACAGCAGGGTCTCTTGTAACTCTGGACAGGAAGATCCAGGGCAGGACGTTGGCTCTGGGAGAGTCCagaggtgtgtgtatgtaatccAGTGATGTGTAAATATCTCCGTACAGGAGCCACTGCCTCACAGGCCTTTGGCCACCTGCTTCTCAATAAAACAATTCCTCCacttgcagtgtgtgtgtgtttttgtcagtgcgtgtttgtgtgtgtcgaTGTGTGCTGCTTGCAGTTGTACTAACACATTGCGGAGTCTGGAGAGAGAAGGGTTAAACTCTTCCAGTGTTTACGAGGGAGCCAGTCAATCTGCTCTGCCAGTCTCTGCCTGGACACTAGTGATGCTGACATGCTGATTGGctgaacagtttgttttttgcagccCATCAGAAGTGTCCAGGCCCTGAGTGCTGGGTAtcaatccatctctctctctcacagattCAGACGTGAGAAGTCCTTCACTGCTGTGACTTGTTACAGTATTGCAAAAACATTCATATTGATCATGCATTCATTGCTCTGATACCTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0005215 transporter activity molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05653 ABCB2, TAP1; ATP-binding cassette, subfamily B (MDR/TAP), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006227 True 4636 mRNA 0.59 15 311224 321088

Neighbor

gene id symbol gene type direction distance location
AMCG00006228 NA coding downstream 12087 296206 ~ 299137 (-)
AMCG00006229 NA coding downstream 20539 287691 ~ 290685 (-)
AMCG00006221 NA coding downstream 44343 263637 ~ 266881 (-)
AMCG00006222 NA coding downstream 48792 256337 ~ 262432 (-)
AMCG00006220 NA coding downstream 69091 236326 ~ 242133 (-)
AMCG00006230 NA coding upstream 23687 344775 ~ 352314 (-)
AMCG00006238 NA coding upstream 187081 508169 ~ 511193 (-)
AMCG00006240 NA coding upstream 218111 539199 ~ 539936 (-)
AMCG00006242 NA coding upstream 344498 665586 ~ 675760 (-)
AMCG00006239 NA coding upstream 355496 676584 ~ 686559 (-)
G108365 NA non-coding downstream 32963 270756 ~ 278261 (-)
G108330 NA non-coding downstream 136031 140559 ~ 175193 (-)
G108349 NA non-coding downstream 192825 117137 ~ 118399 (-)
G108329 NA non-coding downstream 271875 33213 ~ 39349 (-)
G108323 NA non-coding downstream 289874 17554 ~ 21350 (-)
G108366 NA non-coding upstream 44190 365278 ~ 368624 (-)
G108397 NA non-coding upstream 114313 435401 ~ 435621 (-)
G108427 NA non-coding upstream 264454 585542 ~ 712764 (-)
G108451 NA non-coding upstream 450023 771111 ~ 771337 (-)
G108461 NA non-coding upstream 490647 811735 ~ 811963 (-)
G108324 NA other downstream 86083 85489 ~ 225141 (-)
G108379 NA other upstream 12700 333788 ~ 343011 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other upstream 72744 393832 ~ 397899 (-)
AMCG00006241 NA other upstream 158494 479582 ~ 562415 (-)
AMCG00006243 NA other upstream 379447 700535 ~ 701940 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other upstream 404976 726064 ~ 748736 (-)

Expression


Co-expression Network