AMCG00006228


Basic Information

Item Value
gene id AMCG00006228
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 296206 ~ 299137 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006228
ATGCTGCGAGCCCTGCTGGCCCTGTTCGCCGTCCAGTGCGCTTGTGCCGCAAACCACTCTCTGCACTATGTCTGCACTGGCGCCTCAGGCCCAGTGGCAGTGACGGAGGTGATTGTGGTCACCATGCTGGACAAGGAGGAGCTGAGTTACTACAACACCACAGTGGGTGAGGTGGTCCCTCGGCAGGAGTGGCTGAAAGATGAAGAGGGTTTACAGGGCTGGAAGATTAACTCCTATGTATCTGTTGACACCCTGAACTCTGTACGCACTGCAGGCATTGCAACACTGCAGCAGATGTGGGGCTGCAAACAGGGTGACGACAATGCAACCCGATATTTCTGGCAGTACGGCTACAAAGGCAAAGATTATCTCACCCTAGACACCAACACCTGGGCCTTCACCACCGTCAGTCCCTGGCATCCGCGCAGGACCCCGAGCTTGAAGAGTTCGAGGACGTACCTGCAGCAGCACTGCCTGGAGTGGCTGAAGAAGTTGCTGGAGCACGGCAGGGAGGCTCTGGACAGGAAAGtCCCCCACGAGGTGTCAGTGCTGCCCAATGGGGACGGGACGTACCAGGTCACAAAGAGCCTGAGACTGAGCGGCTGGGAAAGGCTCTGGCACACATTCTCCTGCCACGTGAAACACGCCAGCCTGGAAGAGGCATCTGTTACTTACTGGGGTAAGAGAGAGGCTTCACCAATGCCGATGATGCTTTTCAGATTGGCAGTGGAGTGa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006228 True 735 mRNA 0.57 4 296206 299137

Neighbor

gene id symbol gene type direction distance location
AMCG00006229 NA coding downstream 5521 287691 ~ 290685 (-)
AMCG00006221 NA coding downstream 29325 263637 ~ 266881 (-)
AMCG00006222 NA coding downstream 33774 256337 ~ 262432 (-)
AMCG00006220 NA coding downstream 54073 236326 ~ 242133 (-)
AMCG00006219 NA coding downstream 100857 181384 ~ 195349 (-)
AMCG00006227 NA coding upstream 12087 311224 ~ 321088 (-)
AMCG00006230 NA coding upstream 45638 344775 ~ 352314 (-)
AMCG00006238 NA coding upstream 209032 508169 ~ 511193 (-)
AMCG00006240 NA coding upstream 240062 539199 ~ 539936 (-)
AMCG00006242 NA coding upstream 366449 665586 ~ 675760 (-)
G108365 NA non-coding downstream 17945 270756 ~ 278261 (-)
G108330 NA non-coding downstream 121013 140559 ~ 175193 (-)
G108349 NA non-coding downstream 177807 117137 ~ 118399 (-)
G108329 NA non-coding downstream 256857 33213 ~ 39349 (-)
G108323 NA non-coding downstream 274856 17554 ~ 21350 (-)
G108366 NA non-coding upstream 66141 365278 ~ 368624 (-)
G108397 NA non-coding upstream 136264 435401 ~ 435621 (-)
G108427 NA non-coding upstream 286405 585542 ~ 712764 (-)
G108451 NA non-coding upstream 471974 771111 ~ 771337 (-)
G108461 NA non-coding upstream 512598 811735 ~ 811963 (-)
G108324 NA other downstream 71065 85489 ~ 225141 (-)
G108379 NA other upstream 34651 333788 ~ 343011 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other upstream 94695 393832 ~ 397899 (-)
AMCG00006241 NA other upstream 180445 479582 ~ 562415 (-)
AMCG00006243 NA other upstream 401398 700535 ~ 701940 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other upstream 426927 726064 ~ 748736 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023925 si:dkey-52p2.5 coding NC_007136.7 CM002909.2 10987817 ~ 11001745 (+)