AMCG00006231


Basic Information

Item Value
gene id AMCG00006231
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 426976 ~ 433905 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006231
GGGGATATGCATATCAAATGCAAGTTTTGTGTAAATTTAACAAAGGGAAAATGGATGAACTGGTCTTAATAGATCgccaagtttttaataaaattatgatTGTGGAGTATGACAGCAGGGTGGGTAAGTTTGTGGGTTACACTACATATGGGATGTACATTGCGGAGAAATGGAACAAACAGTCACAGTTTCTGGCAGAATTGAGGTTCTACCGGGATGAAATCTGCAAACCCGGAGCTGAGAACGTCACTGACACCATATTTGATAAAACAGTTGAACCCACTGTGAGTGTCTCTTGGACCCCAGCACTCAGCTCAAAGCAGCCCACCACTCTCGCATGCCATGCTTTTGGCTTCTACCCACAACAAATCAAGGTCACCTGGCTGAGAAATGGCGCTGAGGTGAAGCACGGCGTGATGTTCACTGATCTGATGGCTGATGGAGACTGGTACTATCAGATACACTCGCACCTGGAGCTCACGCCCCGGTCTGGAGAGACCATCTCCTGCAGAGTGGAGCACAGCAGCCTGAAGGAGCCCCTGGAGATAAAGACGTATACTGGTCCCAACAAGCTA
>TU135365
CTTAACACCTGCTCTACTGTgctgcaaaaatattttaacaaagttAATCTGAAAgttatatttcagtttgaattaaaaccATGTTCATCTGCTTTTGTTTCCAGTTGAACCCACTGTGAGTGTCTCTTGGACCCCAGCACTCAGCTCAAAGCAGCCCACCACTCTCGCATGCCATGCTTTTGGCTTCTACCCACAACAAATCAAGGTCACCTGGCTGAGAAATGGCGCTGAGGTGAAGCACGGCGTGATGTTCACTGATCTGATGGCTGATGGAGACTGGTACTATCAGATACACTCGCACCTGGAGCTCACGCCCCGGTCTGGAGAGACCATCTCCTGCAGAGTGGAGCACAGCAGCCTGAAGGAGCCCCTGGAGATAAAGTGGGATCCCTTGATGCCCGAGTCTGACAGGAACAAGATCATTATTGGGGCGTCTGGTCTGGTGCTGGGTCTTGTCATCGCAGCTGCGGGGGGAGTCTACTACAAGAAGAAATCCACAGGACGTATACTGGTCCCAACAAGCTAAGACACCTTCCAGCACATGCGGACGGGTTTAAAGGAAGAACAACGGAAGGGTTTACAGATGCAGAAACATATTGCAGTCATTCAGAC

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006231 False 575 mRNA 0.47 3 426976 433434
TU135365 True 612 TUCP 0.49 4 429763 433905

Neighbor

gene id symbol gene type direction distance location
AMCG00006224 NA coding upstream 89696 320671 ~ 337280 (+)
AMCG00006225 NA coding upstream 124391 299339 ~ 302585 (+)
AMCG00006226 NA coding upstream 130579 283664 ~ 296397 (+)
AMCG00006223 psb8,LOC107694197,LOC107574275,LOC105888923,LOC105903056 coding upstream 148887 274192 ~ 278089 (+)
AMCG00006215 NA coding upstream 155329 266634 ~ 271647 (+)
AMCG00006235 NA coding downstream 56800 490705 ~ 491797 (+)
AMCG00006233 NA coding downstream 113921 547826 ~ 562265 (+)
AMCG00006234 NA coding downstream 135499 569404 ~ 576257 (+)
AMCG00006237 NA coding downstream 176562 610467 ~ 633814 (+)
AMCG00006252 NA coding downstream 455173 889078 ~ 895444 (+)
G108256 NA non-coding upstream 21636 384397 ~ 405340 (+)
G108252 NA non-coding upstream 21712 397163 ~ 405264 (+)
G108253 NA non-coding upstream 34183 374136 ~ 392793 (+)
G108248 NA non-coding upstream 113563 311554 ~ 313413 (+)
G108239 NA non-coding upstream 162420 263429 ~ 264556 (+)
G108263 NA non-coding downstream 1496 435401 ~ 435621 (+)
G108312 NA non-coding downstream 274152 708057 ~ 708928 (+)
G108314 LOC106569953 non-coding downstream 293972 727877 ~ 730186 (+)
G108318 NA non-coding downstream 339754 773659 ~ 774039 (+)
G108308 NA non-coding downstream 348120 782025 ~ 782475 (+)
AMCG00006218 NA other upstream 201623 219104 ~ 225353 (+)
AMCG00006205 NA other upstream 245480 175725 ~ 181496 (+)
AMCG00006208 NA other upstream 286318 133988 ~ 140658 (+)
AMCG00006236 NA other downstream 210813 644718 ~ 652140 (+)
G108319 NA other downstream 340904 774809 ~ 791062 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other downstream 412656 846561 ~ 855720 (+)
AMCG00006256 NA other downstream 551968 985873 ~ 1003871 (+)
AMCG00006276 NA other downstream 844555 1278460 ~ 1286052 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036599 mhc2dab coding NC_007119.7 CM002892.2 36466771 ~ 36469117 (-)
mexican tetra (Astyanax mexicanus) G55560 NA non-coding NC_035902.1 CM008305.1 30346432 ~ 30349621 (-)